Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g0690 ATGGCGACGAGGAACCGAACAGCGCAGTTCAGAAAGCACAGGGACGCCGTGAAGAGCGTCCGTGCGCCTTTATCTTCCTCGGCAGCTAGTTCGAGCGGGCCAGTTATTGAGATGGTGAGTTCATCTCTTCTTCGTTCAAAGGGCTCTTCTTATGCTCCTCTTAGCACTGAAGATCCAGGACCTTCTAGTAGTGATGCATTTATGGTTGGCCTACCTCCAGCTTGGGTGGACGATTCTGAAGAAATAACTGTAAATATACAGAACATTCGTAGGAAGATGGCGGGGTTAGTCAAAGCTCATTCTAAAGCTTTAATGCCTTCTTTTGCTGATGGCAAAGAAGATCAGCATACTATTGAGGCTCTTACGCAAGAGATTACCAATCTTTTGAAAACCTCTGAGAAGAGGTTGAAGAAAATTTCTAGCACCGGAGCCTCTGAGGATTTTAACATAAGGAAAAATGTCCAGCGTTCTCTTGCTACAGAGCTTCAGAACCTTTCTATGGACCTCCGGAGACGGCAGTCAATGTATCTGAAACGTCTGCAGCAGCAAAAGGAGGGACATGATGGAATTGATTTGGAGATAAATTTGAATGGTAACAAAACTCTACTGGAGGATGACGGATTTGGTGAATTTGGAATCAATGAAAACCAAACGATGACATTAGGAACGGATGAGCAGCACATCCAGGGAAGGGAGAAAGAGATCATACAGGTTGTGAAATCGGTGAATGAGCTCGCCCAAATTATGAAGGATCTCTCAACCCTTGTTATAGACCAGGGTACCATTGTTGATAGAATTGACCACAATATTCAAAATGTTGCTGCATCAGTTGAGGAGGGCTATAAACAGCTTCAGAAGGCAGAGAAAACTCAGAAGAGCGGAGGAATGGTGAAGTGTGCAACAGTGCTTGTTATTATGTGTTTCGTGATGCTGCTTCTCTTGATACTCAAGGAGATAATTATGTAA 966 44.0 MATRNRTAQFRKHRDAVKSVRAPLSSSAASSSGPVIEMVSSSLLRSKGSSYAPLSTEDPGPSSSDAFMVGLPPAWVDDSEEITVNIQNIRRKMAGLVKAHSKALMPSFADGKEDQHTIEALTQEITNLLKTSEKRLKKISSTGASEDFNIRKNVQRSLATELQNLSMDLRRRQSMYLKRLQQQKEGHDGIDLEINLNGNKTLLEDDGFGEFGINENQTMTLGTDEQHIQGREKEIIQVVKSVNELAQIMKDLSTLVIDQGTIVDRIDHNIQNVAASVEEGYKQLQKAEKTQKSGGMVKCATVLVIMCFVMLLLLILKEIIM 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5190443 5194688 - MC09g0570 Mch9g0690 697572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g0690 321 PANTHER SYNTAXIN 82 306 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Mch9g0690 321 Gene3D - 72 279 - -
Mch9g0690 321 SMART SynN_4 66 181 IPR006011 GO:0016020(InterPro)
Mch9g0690 321 SMART tSNARE_6 220 287 IPR000727 -
Mch9g0690 321 Pfam SNARE domain 261 313 IPR000727 -
Mch9g0690 321 ProSitePatterns Syntaxin / epimorphin family signature. 231 270 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Mch9g0690 321 MobiDBLite consensus disorder prediction 1 34 - -
Mch9g0690 321 CDD SNARE_syntaxin16 228 286 - -
Mch9g0690 321 SUPERFAMILY t-snare proteins 71 280 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Mch9g0690 321 FunFam Syntaxin-43 72 279 - -
Mch9g0690 321 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 225 287 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g2794 Mch-Chr8:30939086 Mch9g0690 Mch-Chr9:5190443 4.25E-132 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g0690 K08489 - csv:101204192 536.184