Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g0769 ATGGATGATAACACAGAGAAATCAGAGAGAGTAGAAGAATTCAAGTATGATTTCACCGGCGGCGACGGGGTTGTGAAGGAGCAAGATCGGCTACTTCCGATAGCGAATGTGGGGAGGATAATGAAGCAAATTCTTCCTCCAAATGCCAAAATCTCCAAAGAAGCCAAAGAAACTATGCAGGAATGTGTGTCAGAGTTCATCAGCTTTGTCACCGGCGAGGCGTCCGATAAGTGCCATAAGGAGAAGAGGAAGACGGTGAACGGCGACGACATCTGCTCGGCCTTGGCGACGCTCGGTTTCGACGATTACGCGGAGCCTTTGAGGAGGTATTTGGTTAGGTATAGAGAGATGGAAGGGGAGAGAGCTCAACAGAATAAGGGATGCTGCAATAGTTCT 396 48.74 MDDNTEKSERVEEFKYDFTGGDGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYREMEGERAQQNKGCCNSS 132
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5755501 5755896 - MC09g0632 Mch9g0769 697651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g0769 132 Gene3D Histone, subunit A 22 131 IPR009072 GO:0046982(InterPro)
Mch9g0769 132 SUPERFAMILY Histone-fold 28 127 IPR009072 GO:0046982(InterPro)
Mch9g0769 132 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 13 126 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Mch9g0769 132 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
Mch9g0769 132 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch9g0769 132 FunFam Nuclear transcription factor Y subunit B-3 20 132 - -
Mch9g0769 132 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Mch9g0769 132 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Mch9g0769 132 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0719 Mch-Chr10:4974682 Mch9g0769 Mch-Chr9:5755501 1.54E-44 transposed
Mch10g1442 Mch-Chr10:13919189 Mch9g0769 Mch-Chr9:5755501 5.90E-39 transposed
Mch2g0464 Mch-Chr2:3371249 Mch9g0769 Mch-Chr9:5755501 2.78E-47 transposed
Mch5g1786 Mch-Chr5:18304490 Mch9g0769 Mch-Chr9:5755501 6.50E-46 transposed
Mch6g2057 Mch-Chr6:22841288 Mch9g0769 Mch-Chr9:5755501 4.14E-34 transposed
Mch7g1158 Mch-Chr7:15384051 Mch9g0769 Mch-Chr9:5755501 3.91E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44026 PF00808 CBFD_NFYB_HMF 1.50E-27 CL0012 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g0769 K08065 - csv:101204763 238.424