Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g0770 GTGGAAGGAGAAGAACAAGAAGTTGAGCAAAACAAACACCATGATCAGCTCCTCAATCACTTCCTCTATGGCTCTCCCAATGGAGATGATGATCAAACCAACAGCCATATTGGCTCAACTTCTTCACTTCAACAACAAAGAGTTAAGAAGAAGCGGAATCTCCCCGGCACTCCAGGCAAATTCCGCTCACCCGCCCTTCTTCTTTATCCAAATGCTGAAGTGATTGCTTTATCACCCACAACCCTAATGGCGACAAATAGGTTTGTGTGTGAGATATGCAACAAGGGGTTTCAGAGGGATCAAAACCTTCAATTGCACAGGAGAGGGCACAACCTGCCGTGGAAACTCCGGCAAAGAACCAACGACGGGGAAGTGAAGAAACGGGTGTACGTGTGCCCCGAACCGACGTGTGTTCATCACAACCCGGCTCGAGCGCTCGGGGATCTTACGGGGATTAAGAAGCATTTTAGCAGAAAACATGGGGAGAAGAAATGGAAGTGTGAGAAATGCTCCAAGAAGTATGCAGTTCAGTCTGATTGGAAGGCTCATCAAAAGACTTGTGGCACTAGAGAGTACAAATGTGACTGTGGAACTCTCTTTTCCAGAAGGGACAGCTTCATCACACACAGGGCTTTCTGTGATGCATTAACAGAAGAAAACAACAAACTAAAACAAGGAGTAGTTGTCAACAGTACTATAGAACCAATCTCAGTCTCCATTCCTCCAAAACTCTCTCAATTTGGCAAATCAATGATGCCTGAATTCAACCTCTACGACCACAAAAATCCTCTCAAATCCCTCCCTTGGCAACTCGACAACTCAAACCCGTTCCCCGCCCCGGTCGCCGCTACTGCCTCGGGAGGCTTGTTCATGGCTGGACCCGGAAGCAGCAACTCCTCCTCTTTCTCAAGCCTTCAGCTCAGTTCCGCTGCCGCTTCTCGTTTCAGCTACCTTCATGACAGCAAAAATAGCTGCTTTCAGGTTTCTGGGTCGGGCACGGCAGCGCTTGTAACATCAGCCACCGCCTTGTTGCAGAAAGCTGCACAGATCGGTGCCACTGCAAGCTCCATAGGTGGTTTGAACTCACCATTGGAAGTGCAACATTCTGATCAACAAGACATGGTAGGGATCGATATGGGAATGTATGGACATATGATGACGACGAAAGAACAAGATAATTGTAGTAGTAGCAACTCGAGCTTTCTCGTCCATGAAAAGGGTCAGTGGTCGGTATCGAGGTTCTCCGATGGTGACGTCAGTGGCGAGAGTCCCATGATGACTCTGGATTTGTTGGGAGAAGGAGGGTGGAGGTTGAGACAGTTGCAGGAAGATCAAAATCGCCACCACCACCGTCAGACCATGCCGATTATGAAGCATTTTGAGCTACAAAACTTTGATCATGGAGATCCAAATGTTGACAAATCCATATTTGAGTTC 1437 47.81 VEGEEQEVEQNKHHDQLLNHFLYGSPNGDDDQTNSHIGSTSSLQQQRVKKKRNLPGTPGKFRSPALLLYPNAEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNDGEVKKRVYVCPEPTCVHHNPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHQKTCGTREYKCDCGTLFSRRDSFITHRAFCDALTEENNKLKQGVVVNSTIEPISVSIPPKLSQFGKSMMPEFNLYDHKNPLKSLPWQLDNSNPFPAPVAATASGGLFMAGPGSSNSSSFSSLQLSSAAASRFSYLHDSKNSCFQVSGSGTAALVTSATALLQKAAQIGATASSIGGLNSPLEVQHSDQQDMVGIDMGMYGHMMTTKEQDNCSSSNSSFLVHEKGQWSVSRFSDGDVSGESPMMTLDLLGEGGWRLRQLQEDQNRHHHRQTMPIMKHFELQNFDHGDPNVDKSIFEF 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5767274 5770114 + MC09g0633 Mch9g0770 697652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g0770 479 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 191 228 - -
Mch9g0770 479 Gene3D Classic Zinc Finger 71 134 - -
Mch9g0770 479 MobiDBLite consensus disorder prediction 1 16 - -
Mch9g0770 479 SMART c2h2final6 165 185 IPR013087 -
Mch9g0770 479 SMART c2h2final6 88 110 IPR013087 -
Mch9g0770 479 SMART c2h2final6 130 160 IPR013087 -
Mch9g0770 479 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Mch9g0770 479 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 110 IPR013087 -
Mch9g0770 479 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 126 160 - -
Mch9g0770 479 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 38 445 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Mch9g0770 479 FunFam protein indeterminate-domain 12-like 68 136 - -
Mch9g0770 479 Pfam Zinc finger, C2H2 type 88 110 IPR013087 -
Mch9g0770 479 Gene3D Classic Zinc Finger 144 224 - -
Mch9g0770 479 SUPERFAMILY beta-beta-alpha zinc fingers 87 186 IPR036236 -
Mch9g0770 479 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 164 188 - -
Mch9g0770 479 MobiDBLite consensus disorder prediction 1 62 - -
Mch9g0770 479 FunFam protein indeterminate-domain 5, chloroplastic-like 143 222 - -
Mch9g0770 479 MobiDBLite consensus disorder prediction 26 51 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g2055 Mch-Chr6:22817996 Mch9g0770 Mch-Chr9:5767274 2.26E-100 dispersed
Mch8g1263 Mch-Chr8:9149053 Mch9g0770 Mch-Chr9:5767274 7.49E-96 dispersed
Mch9g0770 Mch-Chr9:5767274 Mch9g0902 Mch-Chr9:7090729 6.47E-98 dispersed
Mch9g0770 Mch-Chr9:5767274 Mch1g0792 Mch-Chr1:11567958 5.34E-102 transposed
Mch9g0770 Mch-Chr9:5767274 Mch11g0205 Mch-Chr11:1311215 4.60E-101 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44027 None None None None Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g0770 - - - 0.0