Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch9g0801 | ATGAATTTGGGTGCGGAAGGAGACCCTCAAGAGCGTGCTATCACATTATTTGTGTTGCTTCTCTGTGCTTGTATTGTAATTGGTCATCTTCTTGAGGAAAGTCGTTGGATTAACGAATCAGTCACTGCCCTTTTCATTGGCCTTTTAACTGGAACTTTCATCTTGTTAACAAGCAGTGGCAGACACTCTCGCATCCTAGTGTTTAATGAAGAGCTTTTCTTCATTTATGTTCTTCCACCTATAATATTTAATGCTGGGTTTCAGGTGAAAAAGAAACAGTTCTTCCGAAATTTTCTGATGATCATGTTGTTCGGTGCTGTTGGTACTGTGATCTCATTTCTCATTATATCATTAGGTTCACTCAATTTATTCAAGACATTGGACCTTGGCTACTTAGAAGTGGGTGATTATTTTGCCCTAGGAGCAATCTTTTCGGCCACAGATAGTGTTTGCACGTTGCAGGTGCTTGATCGGGATGAGACTCCTTTTCTGTATAGTCTAGTCTTTGGTGAAGGCGTTGTTAATGATGCTACCTCCATTGTACTTTTCAAAGCAATCCAGAGGTTTGACCTCTCCCACATCACCTCAACCAATGCTTTTGAGCTTCTTGGAAGTTTTCTCTATTTATTCTTCGCAAGCAGCTCGTTGGGAGTATTGGTTGGGTTGGCCAGTGCATTCATCATAAAGAAACTATACTTTGGCAGGCACTCGACTGATCGTGAGGTTGCCTTGATGATTTTAATGCCTTACCTTTCCTATATGATTGCTGAATTGTGCAATCTTAGTGGTATTCTTACCGTGTTCTTTTGTGGGATTGTCATGTCTCATTATACGTGGCATAATGTGACTGAAAGTTCAAGAGTTACCACCAAGCATGCTTTTGCAACATTCTCATATGTTTCAGAGATTTTCATCTTCTCATATGTTGGTATGGATGCTTTGGATATTGAGAAGTGGAGAATTGTTCGCCAAAGGCTTTGGATATTGGCTCGAGTGAGTCTGGTACTGCTAGGTTTAGTCCTTGTTGCAAGAGCAGCTTTTGTATTTCCACTCTCTTTTATATCCAACTTGACTAGAAAGTCTGAGAGTGCCAAAATTGGGTTTAAGCAGCAGGTTACAATTTGGTGGGCTGGGCTTATGAGAGGTGCTGTGTCACTGGCACTTGCTTACAATCAGTTCGCAAATTCAGGCCACACGCAACTGCAAGGAAATGCGATCATGATTACTAGCACAATCACAATTGTTCTCTTTACTAATGTGGTATTTGGGCTGTTAACTAAGCCTATTGTAAGATGCATGCTTCCACCTAGTCATAGACAGATAGATGGTACAATGGAAGCAGAATCTCCACCGAAGTCGCTTGTTCATCCTCTTTTGCACAACGATGAGGATCCCGGGTCCGATGCTGGAGGATCGAACATTCCCCGTCCACCCAGCCTACGTATGCTGTTGACAACTCCAACTCGTTCGGTCCATTACTATTGGCGAATGCTCGATGATCGATACATGCGTCCTATTTTCGGTGGAAGAGGTTTTGTACCTTTCATCCCTGGTTCACCAACTTAA | 1566 | 42.27 | MNLGAEGDPQERAITLFVLLLCACIVIGHLLEESRWINESVTALFIGLLTGTFILLTSSGRHSRILVFNEELFFIYVLPPIIFNAGFQVKKKQFFRNFLMIMLFGAVGTVISFLIISLGSLNLFKTLDLGYLEVGDYFALGAIFSATDSVCTLQVLDRDETPFLYSLVFGEGVVNDATSIVLFKAIQRFDLSHITSTNAFELLGSFLYLFFASSSLGVLVGLASAFIIKKLYFGRHSTDREVALMILMPYLSYMIAELCNLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATFSYVSEIFIFSYVGMDALDIEKWRIVRQRLWILARVSLVLLGLVLVARAAFVFPLSFISNLTRKSESAKIGFKQQVTIWWAGLMRGAVSLALAYNQFANSGHTQLQGNAIMITSTITIVLFTNVVFGLLTKPIVRCMLPPSHRQIDGTMEAESPPKSLVHPLLHNDEDPGSDAGGSNIPRPPSLRMLLTTPTRSVHYYWRMLDDRYMRPIFGGRGFVPFIPGSPT | 521 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 5992947 | 6003965 | + | MC09g_new0143 | Mch9g0801 | 697683 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch9g0801 | 521 | NCBIfam | sodium/hydrogen exchanger 3 | 13 | 434 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Mch9g0801 | 521 | Gene3D | - | 134 | 185 | - | - | |
| Mch9g0801 | 521 | Pfam | Sodium/hydrogen exchanger family | 21 | 431 | IPR006153 | GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro) | |
| Mch9g0801 | 521 | MobiDBLite | consensus disorder prediction | 442 | 481 | - | - | |
| Mch9g0801 | 521 | PANTHER | SODIUM/HYDROGEN EXCHANGER | 13 | 515 | IPR018422 | GO:0005886(PANTHER)|GO:0006812(InterPro)|GO:0015385(InterPro)|GO:0015385(PANTHER)|GO:0015386(PANTHER)|GO:0016020(InterPro)|GO:0051453(PANTHER)|GO:0071805(PANTHER)|GO:0098719(PANTHER)|GO:1902600(InterPro) | |
| Mch9g0801 | 521 | PRINTS | Na+/H+ exchanger signature | 72 | 83 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Mch9g0801 | 521 | PRINTS | Na+/H+ exchanger signature | 141 | 151 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Mch9g0801 | 521 | PRINTS | Na+/H+ exchanger signature | 86 | 100 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Mch9g0801 | 521 | PRINTS | Na+/H+ exchanger signature | 101 | 109 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch6g1633 | Mch-Chr6:18003274 | Mch9g0801 | Mch-Chr9:5992947 | 8.64E-244 | dispersed | |
| Mch9g0801 | Mch-Chr9:5992947 | Mch9g0803 | Mch-Chr9:6020606 | 9.53E-232 | dispersed | |
| Mch9g0801 | Mch-Chr9:5992947 | Mch9g0802 | Mch-Chr9:6005704 | 4.88e-310 | tandem | |
| Mch3g0723 | Mch-Chr3:11513209 | Mch9g0801 | Mch-Chr9:5992947 | 7.67E-45 | transposed | |
| Mch7g1138 | Mch-Chr7:15254525 | Mch9g0801 | Mch-Chr9:5992947 | 3.70E-243 | wgd |
Pathway information