Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g0825 ATGTCCCTTTCTCCCCACCCCTTTCTCCTTCTTCTCGCCATAGCCTCGCTCTCCCTCTCCGCCGCGCAATGCCCCCTCAACTTCACCCTCCTCCGCCAGTTCTCCCAGAGCTCCGCCGTTTCCCGCCCCGATTTATCCGACGAATGCCATTACATCCGCCTCGGCCTACGCCTCGTCCTCTCCCAGTACCTCAAGCTCACCGGCTCCTTCTTGCCTCCGGCAGACTCTGCGGACTCGTGCTGGAACTCCTACCAATCGGTTGTTGATAGAACTTGGCCGAATTTCAACATCCGGAGCTCTTGCGGGTTTCAGACCGGGTGGATCTCCCAGGGATGTATGAACATCAGTACCAGATCGGAGTTCGAGCGCTTTGTTCCGAAATCGGCGATCGATGGCGTGGTTGCGAACTGTAATCAGTCGCTCGAGAATGGTTCGCCGTGTGCCTCGTGCACGACGAGTCTGTCGGTCGTTCAGGCCTCCGGCTTGACCGGCCAGTCGATCGGCAATGTCACTGATTGCACCGCCTATCCGTCGATCTACGCGGCGGCGTTCGTGAATCACTTCGGCCCGACCGACCGGGGAACTGCCAAGTGCTTGTTCTCGCTCTATCCTCTATCCTCGGGGGAATCGAGAAGCAAGAAGCGGAATACGGTGATTTTGGTGGTTCTGATTTGTTGTGGAATTGGCGCGGCGGCTGCGATTGCCGGCGGTTGGTTCTTCTGGCGGAGACACGAAACGTTAAGAATCTGGAGGAGAAAGAACGATAGAATTGGCAGAACGGTGACCAGTATGGCTTCTGGATTGGAGTCCATAAGCGCGAGCACCACGTTGGTGAAGTTCACGTTCGAGGACATCAAGAAGGCGACGAGGAATTTCTCCAGAGATAACATAATCGGGAGAGGTGGGTATGGAAATGTTTATAAAGGGGTTCTTTCAGACGATTCAGAAGTTGCATTGAAGAGGTTCAAGAACTGCTCAGCAGCTGGAGACGCCATTTTTGCTCATGAAGTGGAGGTAATTTCCAGTGTTAGACATGTGAACCTTGTAGCTCTGAGAGGTTATTGCATTGCCACAACTCCAATGGAGGGTCACCAGAGGATAATTGTGTGTGATTTGATGAAGAATGGGAGTCTGTATGACCATTTATTTGGGTTTTCTGATGAGAGGCTCAGTTGGCCAATTAGGCAAAAGATTGCTCTTGGCACAGCTAGAGGATTGGCTTATCTCCATTACGGAGCTCAGCCTGCCATTATCCATAGAGATATCAAAGCCAGCAACATTCTTTTGGATGAAAACTTTGACCCTAAGGTTGCTGACTTTGGTTTGGCCAAGTTCACTCCAGAAGGAATGACTCATTTGAGCACAAGAGTTGCTGGAACCTTGGGGTATGTGGCTCCCGAGTATGCACTCTACGGCCAATTGACAGAGAGGAGCGATGTGTATAGCTTTGGAGTTGTTCTACTCGAGCTTTTGAGCGGGAGGAAGGCGCTCGGGGTGAGGAGCCATGATAACCAACCATTTCTAGTGACTGATTGGGCTTGGTCTTTGGTGAGGGAACATAAAGCCATGGATGTTGTTGAAGAAGGTATGCCAGAGGTGGGTTATGCAGAGGTTGTGGAGAAGTATGTGTTGATTGCTGTTCTGTGTTCCCATCCACAGCTCCATGCAAGACCAACAATGGATCAGGTTGTGAAAATGTTGGAAACTGACCTCTCTGTTCCTTCAATTCCTGAGAGACCCATCCCTCTGGTTGCTGAGATTGATGAAATTGAGAGATCTATGAGCAGTAGTGGCTCTGCTCAGCATTCTGGTTCAGTTGGCTTTCATAGTTGCACTTTACAAAATGACCAAAAGTAG 1857 50.83 MSLSPHPFLLLLAIASLSLSAAQCPLNFTLLRQFSQSSAVSRPDLSDECHYIRLGLRLVLSQYLKLTGSFLPPADSADSCWNSYQSVVDRTWPNFNIRSSCGFQTGWISQGCMNISTRSEFERFVPKSAIDGVVANCNQSLENGSPCASCTTSLSVVQASGLTGQSIGNVTDCTAYPSIYAAAFVNHFGPTDRGTAKCLFSLYPLSSGESRSKKRNTVILVVLICCGIGAAAAIAGGWFFWRRHETLRIWRRKNDRIGRTVTSMASGLESISASTTLVKFTFEDIKKATRNFSRDNIIGRGGYGNVYKGVLSDDSEVALKRFKNCSAAGDAIFAHEVEVISSVRHVNLVALRGYCIATTPMEGHQRIIVCDLMKNGSLYDHLFGFSDERLSWPIRQKIALGTARGLAYLHYGAQPAIIHRDIKASNILLDENFDPKVADFGLAKFTPEGMTHLSTRVAGTLGYVAPEYALYGQLTERSDVYSFGVVLLELLSGRKALGVRSHDNQPFLVTDWAWSLVREHKAMDVVEEGMPEVGYAEVVEKYVLIAVLCSHPQLHARPTMDQVVKMLETDLSVPSIPERPIPLVAEIDEIERSMSSSGSAQHSGSVGFHSCTLQNDQK 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6190429 6196949 + MC09g0677 Mch9g0825 697707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g0825 618 ProSitePatterns Protein kinases ATP-binding region signature. 298 320 IPR017441 GO:0005524(InterPro)
Mch9g0825 618 Gene3D Phosphorylase Kinase; domain 1 256 371 - -
Mch9g0825 618 SUPERFAMILY Protein kinase-like (PK-like) 268 568 IPR011009 -
Mch9g0825 618 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 373 575 - -
Mch9g0825 618 SMART serkin_6 292 567 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch9g0825 618 PANTHER OS01G0750732 PROTEIN 47 598 IPR050885 -
Mch9g0825 618 ProSitePatterns Serine/Threonine protein kinases active-site signature. 417 429 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch9g0825 618 Pfam Protein kinase domain 294 564 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch9g0825 618 ProSiteProfiles Protein kinase domain profile. 292 571 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch9g0825 618 MobiDBLite consensus disorder prediction 592 618 - -
Mch9g0825 618 Pfam SPARK 19 173 IPR043891 -
Mch9g0825 618 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 253 371 - -
Mch9g0825 618 CDD STKc_IRAK 298 568 - -
Mch9g0825 618 Gene3D Transferase(Phosphotransferase) domain 1 373 581 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch9g0825 Mch-Chr9:6190429 Mch11g0991 Mch-Chr11:6854818 2.50E-73 dispersed
Mch10g0543 Mch-Chr10:3538678 Mch9g0825 Mch-Chr9:6190429 7.83E-52 transposed
Mch7g1121 Mch-Chr7:15151902 Mch9g0825 Mch-Chr9:6190429 6.48E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77688 PF00069 Pkinase 7.30E-41 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g0825 - - - 0.0