Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g0901 ATGAATCCGATGAATAATCCTCTGTTTCCGGTTAAGCAGGAGTTTCCGGGTTCGTCGGAGGGCGGCGGAGACCGGGCGGCGATGGCGGCTCCGCTGCCAATGGAGGGGCTCCACGACGTGGGTCCGCCGCCGTTTCTGACGAAGACGTTTGAAATCGTCGATGACTTCAACACGAACCATGTGATTTCGTGGAGCTTTGGGGGATCCAGCTTCGTGGTTTGGGATCCTCATTGCTTCTCCACTGAATTACTTCCGCGATTCTTTAAGCACAATAATTTCTCCAGCTTCGTACGCCAGCTTAATACTTACGGTTTTAGAAAGGTGGATCCAGATAGATGGGAGTTTGCGAATGAAGGGTTTCTGAGAGGCCAGAAGCATCTCCTCAAGAACATAAAGAGAAGGAGGGCAACGTATCAGCAGCAATCTCTGCATTCCCAACAAGCCGGTGGAGCTTGTGTAGAGGTTGGCCAATTTGGAAGAGATGCAGAAGTGGATCGTCTAAAACGGGACAAGCAAGTGCTGATGATGGAGTTAGTGAAGCTAAGGCAAGAGCAGCAGAACACAAGAGCCTATCTTCAAGCAATGGAGCAAAGGCTGAGAGGAACCGAGATTAAGCAGAGACAAATGATGAATTTCTTAGCGAGAGCCATGCAGAACCCATCGTTTATTCAGCAGTTAGTCCAGCAAAAGGAGAAGAGGAAGGAGCTTGAAGAAGCAATAACCAAGAAGAGGAGAAGGCCAATTGAGCAAGGGCAACAGAGATTTTCAGGTGAAGCATCAAACACCATTAAGACTGAGCCTCTGGAATCTGAAGATCAATATGGGTTTGGGATGACAGAGCTGGAAGCACTTGCATTGGAGATGCAGGGGTTGGGGAAGGCAAGACACGAGGAGGAGGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAAAGGAAGATAAGTCACTGCAATCGGAGGATGAAGATAAAGTTCTTGATGAAGGGTTTTGGGAAGAATTATTCAGTGAGAGATTGGAAGTGGCAAGAGGTGAAAATGAAGATGTGAACGTGTTGGCTGATCGATTGGGCTATTTGGGGTCAAGCCCAAGATAG 1089 48.03 MNPMNNPLFPVKQEFPGSSEGGGDRAAMAAPLPMEGLHDVGPPPFLTKTFEIVDDFNTNHVISWSFGGSSFVVWDPHCFSTELLPRFFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKNIKRRRATYQQQSLHSQQAGGACVEVGQFGRDAEVDRLKRDKQVLMMELVKLRQEQQNTRAYLQAMEQRLRGTEIKQRQMMNFLARAMQNPSFIQQLVQQKEKRKELEEAITKKRRRPIEQGQQRFSGEASNTIKTEPLESEDQYGFGMTELEALALEMQGLGKARHEEEEEEEEEEEEEKEDKSLQSEDEDKVLDEGFWEELFSERLEVARGENEDVNVLADRLGYLGSSPR 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7069155 7073915 + MC09g0744 Mch9g0901 697783

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g0901 362 SMART hsfneu3 41 134 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch9g0901 362 Coils Coil 281 320 - -
Mch9g0901 362 Coils Coil 226 246 - -
Mch9g0901 362 Coils Coil 164 198 - -
Mch9g0901 362 MobiDBLite consensus disorder prediction 291 324 - -
Mch9g0901 362 Gene3D - 38 135 IPR036388 -
Mch9g0901 362 FunFam Heat shock transcription factor 1 38 135 - -
Mch9g0901 362 Pfam HSF-type DNA-binding 45 134 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch9g0901 362 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 32 336 IPR027725 GO:0000978(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0034605(PANTHER)
Mch9g0901 362 MobiDBLite consensus disorder prediction 239 273 - -
Mch9g0901 362 PRINTS Heat shock factor (HSF) domain signature 96 108 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch9g0901 362 PRINTS Heat shock factor (HSF) domain signature 45 68 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch9g0901 362 PRINTS Heat shock factor (HSF) domain signature 83 95 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch9g0901 362 SUPERFAMILY Winged helix DNA-binding domain 41 134 IPR036390 -
Mch9g0901 362 MobiDBLite consensus disorder prediction 253 268 - -
Mch9g0901 362 MobiDBLite consensus disorder prediction 1 28 - -
Mch9g0901 362 ProSitePatterns HSF-type DNA-binding domain signature. 84 108 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch9g0901 362 MobiDBLite consensus disorder prediction 298 314 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g0901 K09419 - - csv:101208010 565.844
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g0678 Mch-Chr8:4835537 Mch9g0901 Mch-Chr9:7069155 5.01E-40 dispersed
Mch8g3143 Mch-Chr8:33715852 Mch9g0901 Mch-Chr9:7069155 3.24E-44 dispersed
Mch10g1679 Mch-Chr10:16848749 Mch9g0901 Mch-Chr9:7069155 9.23E-72 transposed
Mch5g1657 Mch-Chr5:17390744 Mch9g0901 Mch-Chr9:7069155 4.54E-52 transposed
Mch8g0564 Mch-Chr8:4032689 Mch9g0901 Mch-Chr9:7069155 7.59E-84 transposed
Mch9g1357 Mch-Chr9:15898007 Mch9g0901 Mch-Chr9:7069155 5.39E-49 transposed
Mch5g0557 Mch-Chr5:3748058 Mch9g0901 Mch-Chr9:7069155 6.73E-91 wgd
Mch6g1984 Mch-Chr6:22264859 Mch9g0901 Mch-Chr9:7069155 7.30E-108 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch9g0901 . 42 271 HSF AT4G17750 52.6 2.2e-59 226.9
Mch8g0564 . 44 244 HSF AT4G17750 54.6 4.2e-58 222.6
Mch9g1357 . 15 215 HSF AT4G17750 55.7 9.7e-55 211.5
Mch5g0557 . 24 252 HSF AT4G17750 50.2 4.5e-52 202.6
Mch3g1053 . 14 186 HSF AT4G17750 52.2 3.8e-43 172.9
Mch2g0702 . 7 109 HSF AT4G17750 67.0 5.2e-40 162.5
Mch8g0678 . 16 129 HSF AT4G17750 64.9 1.7e-38 157.5
Mch11g0300 . 67 165 HSF AT4G17750 69.7 2.8e-38 156.8
Mch6g2698 . 20 115 HSF AT4G17750 69.8 2.0e-36 150.6
Mch10g1679 . 18 513 HSF AT5G16820 50.3 1.2e-102 370.5
Mch9g0901 . 43 254 HSF AT5G16820 58.3 8.8e-61 231.5
Mch8g0564 . 45 243 HSF AT5G16820 51.7 2.7e-54 209.9
Mch5g0557 . 39 243 HSF AT5G16820 50.5 1.0e-48 191.4
Mch1g1963 . 9 139 HSF AT5G16820 60.7 1.5e-39 161.0
Mch2g0702 . 12 111 HSF AT5G16820 74.0 1.0e-37 154.8
Mch10g1679 . 13 510 HSF AT1G32330 53.5 2.9e-120 429.1
Mch9g0901 . 18 246 HSF AT1G32330 52.5 1.0e-61 234.6
Mch8g0564 . 33 225 HSF AT1G32330 53.7 6.1e-54 208.8
Mch5g0557 . 25 234 HSF AT1G32330 55.7 8.9e-53 204.9
Mch2g0702 . 6 111 HSF AT1G32330 67.9 1.3e-40 164.5
Mch1g1963 . 7 139 HSF AT1G32330 58.3 1.7e-40 164.1
Mch8g0678 . 22 122 HSF AT1G32330 71.3 9.5e-39 158.3
Mch11g0300 . 69 164 HSF AT1G32330 71.9 1.4e-37 154.5
Mch9g0901 . 43 249 HSF AT3G02990 57.1 5.6e-60 228.8
Mch8g0564 . 45 244 HSF AT3G02990 52.2 1.4e-55 214.2
Mch1g1963 . 9 138 HSF AT3G02990 57.3 2.1e-38 157.1
Mch2g0702 . 3 105 HSF AT3G02990 68.9 7.8e-38 155.2
Mch9g0901 . 15 245 HSF AT2G26150 55.6 5.3e-68 255.0
Mch5g0557 . 16 238 HSF AT2G26150 61.5 1.5e-62 236.9
Mch10g1679 . 8 243 HSF AT2G26150 56.1 2.8e-61 232.6
Mch3g1053 . 14 158 HSF AT2G26150 55.5 5.0e-42 168.7
Mch1g1963 . 12 139 HSF AT2G26150 61.7 2.1e-40 163.3
Mch5g0557 . 39 173 HSF AT4G18880 52.2 8.7e-38 154.8
Mch5g0218 . 125 576 HSF AT4G13980 52.1 1.3e-112 403.7
Mch8g0564 . 33 236 HSF AT5G43840 50.5 7.3e-47 184.5
Mch5g0557 . 27 174 HSF AT5G43840 58.8 4.0e-45 178.7
Mch9g0901 . 24 360 HSF AT3G22830 51.9 2.0e-90 329.7
Mch8g0564 . 33 242 HSF AT3G22830 55.9 7.2e-64 241.5
Mch10g1679 . 31 242 HSF AT3G22830 59.0 3.9e-62 235.7
Mch9g0901 . 31 246 HSF AT3G51910 61.8 3.0e-66 248.8
Mch8g0564 . 33 249 HSF AT3G51910 51.6 4.1e-55 211.8
Mch9g0901 . 27 235 HSF AT3G63350 57.9 4.2e-63 238.4
Mch8g0564 . 33 232 HSF AT3G63350 53.0 4.9e-51 198.4
Mch9g0901 . 44 232 HSF AT1G67970 51.8 6.9e-45 178.3
Mch1g1212 . 2 300 HSF AT4G36990 54.3 9.2e-74 273.9
Mch6g2698 . 16 336 HSF AT4G11660 52.1 3.0e-80 295.8
Mch11g0300 . 63 166 HSF AT4G11660 74.0 6.9e-45 178.3
Mch8g0678 . 18 124 HSF AT4G11660 69.2 2.2e-43 173.3
Mch1g1212 . 2 107 HSF AT4G11660 70.8 2.5e-42 169.9
Mch6g1258 . 10 107 HSF AT4G11660 68.4 1.8e-37 153.7
Mch10g1679 . 33 126 HSF AT4G11660 69.1 1.6e-36 150.6
Mch1g0401 . 31 216 HSF AT2G41690 56.6 1.3e-47 186.8
Mch11g0300 . 48 398 HSF AT1G46264 52.2 1.2e-88 323.6
Mch8g0678 . 21 342 HSF AT1G46264 52.6 5.0e-82 301.6
Mch6g1258 . 5 200 HSF AT1G46264 54.3 1.6e-56 216.9
Mch10g1679 . 33 138 HSF AT1G46264 72.6 9.6e-41 164.5
Mch5g0218 . 124 219 HSF AT1G46264 71.9 6.4e-37 151.8
Mch2g0702 . 11 104 HSF AT1G46264 72.3 8.4e-37 151.4
Mch6g0800 . 7 179 HSF AT3G24520 65.3 3.0e-60 229.2
Mch9g0901 . 42 271 HSF AT4G17750 52.6 2.2e-59 226.9
Mch8g0564 . 44 244 HSF AT4G17750 54.6 4.2e-58 222.6
Mch9g1357 . 15 215 HSF AT4G17750 55.7 9.7e-55 211.5
Mch5g0557 . 24 252 HSF AT4G17750 50.2 4.5e-52 202.6
Mch3g1053 . 14 186 HSF AT4G17750 52.2 3.8e-43 172.9
Mch2g0702 . 7 109 HSF AT4G17750 67.0 5.2e-40 162.5
Mch8g0678 . 16 129 HSF AT4G17750 64.9 1.7e-38 157.5
Mch11g0300 . 67 165 HSF AT4G17750 69.7 2.8e-38 156.8
Mch6g2698 . 20 115 HSF AT4G17750 69.8 2.0e-36 150.6
Mch10g1679 . 18 513 HSF AT5G16820 50.3 1.2e-102 370.5
Mch9g0901 . 43 254 HSF AT5G16820 58.3 8.8e-61 231.5
Mch8g0564 . 45 243 HSF AT5G16820 51.7 2.7e-54 209.9
Mch5g0557 . 39 243 HSF AT5G16820 50.5 1.0e-48 191.4
Mch1g1963 . 9 139 HSF AT5G16820 60.7 1.5e-39 161.0
Mch2g0702 . 12 111 HSF AT5G16820 74.0 1.0e-37 154.8
Mch10g1679 . 13 510 HSF AT1G32330 53.5 2.9e-120 429.1
Mch9g0901 . 18 246 HSF AT1G32330 52.5 1.0e-61 234.6
Mch8g0564 . 33 225 HSF AT1G32330 53.7 6.1e-54 208.8
Mch5g0557 . 25 234 HSF AT1G32330 55.7 8.9e-53 204.9
Mch2g0702 . 6 111 HSF AT1G32330 67.9 1.3e-40 164.5
Mch1g1963 . 7 139 HSF AT1G32330 58.3 1.7e-40 164.1
Mch8g0678 . 22 122 HSF AT1G32330 71.3 9.5e-39 158.3
Mch11g0300 . 69 164 HSF AT1G32330 71.9 1.4e-37 154.5
Mch9g0901 . 43 249 HSF AT3G02990 57.1 5.6e-60 228.8
Mch8g0564 . 45 244 HSF AT3G02990 52.2 1.4e-55 214.2
Mch1g1963 . 9 138 HSF AT3G02990 57.3 2.1e-38 157.1
Mch2g0702 . 3 105 HSF AT3G02990 68.9 7.8e-38 155.2
Mch9g0901 . 15 245 HSF AT2G26150 55.6 5.3e-68 255.0
Mch5g0557 . 16 238 HSF AT2G26150 61.5 1.5e-62 236.9
Mch10g1679 . 8 243 HSF AT2G26150 56.1 2.8e-61 232.6
Mch3g1053 . 14 158 HSF AT2G26150 55.5 5.0e-42 168.7
Mch1g1963 . 12 139 HSF AT2G26150 61.7 2.1e-40 163.3
Mch5g0557 . 39 173 HSF AT4G18880 52.2 8.7e-38 154.8
Mch5g0218 . 125 576 HSF AT4G13980 52.1 1.3e-112 403.7
Mch8g0564 . 33 236 HSF AT5G43840 50.5 7.3e-47 184.5
Mch5g0557 . 27 174 HSF AT5G43840 58.8 4.0e-45 178.7
Mch9g0901 . 24 360 HSF AT3G22830 51.9 2.0e-90 329.7
Mch8g0564 . 33 242 HSF AT3G22830 55.9 7.2e-64 241.5
Mch10g1679 . 31 242 HSF AT3G22830 59.0 3.9e-62 235.7
Mch9g0901 . 31 246 HSF AT3G51910 61.8 3.0e-66 248.8
Mch8g0564 . 33 249 HSF AT3G51910 51.6 4.1e-55 211.8
Mch9g0901 . 27 235 HSF AT3G63350 57.9 4.2e-63 238.4
Mch8g0564 . 33 232 HSF AT3G63350 53.0 4.9e-51 198.4
Mch9g0901 . 44 232 HSF AT1G67970 51.8 6.9e-45 178.3
Mch1g1212 . 2 300 HSF AT4G36990 54.3 9.2e-74 273.9
Mch6g2698 . 16 336 HSF AT4G11660 52.1 3.0e-80 295.8
Mch11g0300 . 63 166 HSF AT4G11660 74.0 6.9e-45 178.3
Mch8g0678 . 18 124 HSF AT4G11660 69.2 2.2e-43 173.3
Mch1g1212 . 2 107 HSF AT4G11660 70.8 2.5e-42 169.9
Mch6g1258 . 10 107 HSF AT4G11660 68.4 1.8e-37 153.7
Mch10g1679 . 33 126 HSF AT4G11660 69.1 1.6e-36 150.6
Mch1g0401 . 31 216 HSF AT2G41690 56.6 1.3e-47 186.8
Mch11g0300 . 48 398 HSF AT1G46264 52.2 1.2e-88 323.6
Mch8g0678 . 21 342 HSF AT1G46264 52.6 5.0e-82 301.6
Mch6g1258 . 5 200 HSF AT1G46264 54.3 1.6e-56 216.9
Mch10g1679 . 33 138 HSF AT1G46264 72.6 9.6e-41 164.5
Mch5g0218 . 124 219 HSF AT1G46264 71.9 6.4e-37 151.8
Mch2g0702 . 11 104 HSF AT1G46264 72.3 8.4e-37 151.4
Mch6g0800 . 7 179 HSF AT3G24520 65.3 3.0e-60 229.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001412 1 3 2 0 1 2 2 2 2 2 2 2 2 3 2 2 2 4 2 2 2 2 2 2 2 2 2 12 6 0 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44031 PF00447 HSF_DNA-bind 4.30E-31 CL0123 Mch TF