Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g0902 ATGTTTGCTGCAACTTTGTCCAATTCAACTTCTTTGTCTGAAGAAGCAAGCGTCTCTTCTGGTACAAGAGTCCAGCCTGCAGATTTCAGCTGCTTAAACCCACTCCTTCCGACGTTTTCTGATCATCACCCTCCGCTAAAAGTCAAGAAAAAACGGAGCCTTCCGGGAAACCCAGACCCAGATGCAGAAGTGATTGCACTCTCACCCAAAACCCTTCTTGCCACAAACAGATTTGTGTGTGAGATTTGCAATAAGGGTTTCCAAAGGGATCAGAATTTGCAGCTGCACAGAAGAGGCCACAATCTGCCATGGAAGCTGAAGCAAAGAAACAGCAAAGAAGTGAAGAAGAAGGCGTACGTTTGCCCCGAACCGACGTGCGTCCACCACCATCCTTCGAGAGCCCTCGGAGATCTCACAGGGATCAAAAAGCATTATTGCAGGAAGCATGGAGAGAAGAAATGGAAATGCGAGAAATGTTCTAAAGTCTACGCGGTTCAATCCGATTGGAAAGCCCACTCCAAGACCTGTGGCACTCGAGAATACCGATGTGACTGTGGAACCCTTTTCTCCAGGAAGGATAGCTTCATAACCCACAGAGCTTTTTGTGATGCATTGGCTGAGGAAAGTGCAAGGCTGTCGGCTAACCAATTGGCCATGGCGGCCGCTGCCACTACCATCGACATGAACACGTCATCCGCCGCCCAAACTCTCTTCCCTTTCGGCGGCCACCACCAGTTTCCGAATTCATCGTTACCGCCACCGCCACCGACCCACATGTCCCTAAACCCTTGGGACCACACCCAAAACCCTAACCCTAATCACACCCTCCAAATCATCAAGCCAGAAAATTCTCATTCTCATCCACACCATTTTCACCAAATTTCAAATTTACCCCATCCTAATAATTCCCACACCAATCACCCTTTTACCCTGATCCAAGAACCCTCCTCCGCCGGCCACCACCATAAGCCAGCCTCATCATCAATGATAAGCTCACCCTTTAGGAACCTCCACGTGTCGGTGCAACCAGGCTCAAATGCGGCCACGTCACCCCACCTTTCAGCCACTGCCCTACTCCAAAAGGCTGCGATCGTGGGCGTCGGCGCTGCCAAATCTGGTCACCAACTCGAGTCAATGGGCCACATGACCCACATCAATATGGCAATGGCTGAGTTCGCGGCACCGAGTCACATCGATTCACTAAATCAACTCGGCCCGGAGTACGGCCAGCTGGCAGCTACTGCCACGTGGCAGAAGAGTGACCGTCTGACCAGGGACTTCCTTGGTTTGACCGACGCCGGTGGCGGCTCCAGCGGCGGAAGAGGTGGGATGGTGCAAGTTAGCATGAGTGTGAAGGATATGCTAACGTACGCAGGAGGACTGGAAGTGCCACGTCAGCACCAAATCTTTAGTAAACCTCATCATCATCATCATGCTTTTGAGTACACGGAGCCAGCTGAAAATGAAACATGGGGGGACTGTTGA 1485 51.38 MFAATLSNSTSLSEEASVSSGTRVQPADFSCLNPLLPTFSDHHPPLKVKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVKKKAYVCPEPTCVHHHPSRALGDLTGIKKHYCRKHGEKKWKCEKCSKVYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLAMAAAATTIDMNTSSAAQTLFPFGGHHQFPNSSLPPPPPTHMSLNPWDHTQNPNPNHTLQIIKPENSHSHPHHFHQISNLPHPNNSHTNHPFTLIQEPSSAGHHHKPASSSMISSPFRNLHVSVQPGSNAATSPHLSATALLQKAAIVGVGAAKSGHQLESMGHMTHINMAMAEFAAPSHIDSLNQLGPEYGQLAATATWQKSDRLTRDFLGLTDAGGGSSGGRGGMVQVSMSVKDMLTYAGGLEVPRQHQIFSKPHHHHHAFEYTEPAENETWGDC 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7090729 7094934 + MC09g0745 Mch9g0902 697784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g0902 494 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 100 IPR013087 -
Mch9g0902 494 Pfam Zinc finger, C2H2 type 78 100 IPR013087 -
Mch9g0902 494 FunFam protein indeterminate-domain 5, chloroplastic-like 132 211 - -
Mch9g0902 494 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 39 434 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Mch9g0902 494 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Mch9g0902 494 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 180 218 - -
Mch9g0902 494 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 153 177 - -
Mch9g0902 494 SMART c2h2final6 119 149 IPR013087 -
Mch9g0902 494 SMART c2h2final6 78 100 IPR013087 -
Mch9g0902 494 SMART c2h2final6 154 174 IPR013087 -
Mch9g0902 494 Gene3D Classic Zinc Finger 58 126 - -
Mch9g0902 494 Gene3D Classic Zinc Finger 147 204 - -
Mch9g0902 494 FunFam protein indeterminate-domain 12-like 57 125 - -
Mch9g0902 494 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 115 149 - -
Mch9g0902 494 SUPERFAMILY beta-beta-alpha zinc fingers 77 174 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g0283 Mch-Chr4:1812106 Mch9g0902 Mch-Chr9:7090729 2.87E-107 dispersed
Mch8g0756 Mch-Chr8:5354386 Mch9g0902 Mch-Chr9:7090729 1.17E-100 dispersed
Mch9g0247 Mch-Chr9:1857760 Mch9g0902 Mch-Chr9:7090729 1.61E-102 dispersed
Mch9g0770 Mch-Chr9:5767274 Mch9g0902 Mch-Chr9:7090729 6.47E-98 dispersed
Mch9g0902 Mch-Chr9:7090729 Mch8g1263 Mch-Chr8:9149053 3.53E-105 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44032 None None None None Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g0902 K25870 - csv:101208253 673.315