Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g0942 ATGGAATTTGATAATGATCTGTTTGGCTACCCAGAAAGTTTCTTGTGGAATAATGACTTGCCTTTTCCCGGGAAAGAAAATGAGAGCTATTCCCACCAATGGTTTGACTTCAATGACTCGGAAGAGATCCTGCTTGATATGCTTGCCGCGACGGCTGGAGGGCCACCGTCATCGCCGGATTCGAGCTCTTGCTCCACTCCGGCGGTGAATGTCAAGGAGGAGTTGGAAGAAGGGAGTTTGAGCGATCTTGTGCAAGAAGGCCATGCAAAGAAGGAGGAGAGGGCGTATAGAGGAGTGCGGCGGCGGCCGTGGGGAAAGTACGCGGCCGAGATAAGAGACTCGACGCGACATGGAGTGAGGGTGTGGTTGGGGACGTTTGAGAGTGCGGAGGCTGCGGCATTGGCCTACGACCAGGCGGCATTTTGCATGAGAGGGGCGTTGGCTACACTCAATTTTCCCGTGGAGGTCGTTCGAGAGTCGCTGAGGGAGATGAAGTACCGGTGGGAGGCGGGGTGCTCGCCCGTGGTGGCGCTCAAGCGGCGCCACTCGATATGGAGGAAGAAGATGGCGGAGGAGGAGAAGATGGAGAAGAAGATGAAGAAGAAAAAAAGTGTAGTTGTTTTTGAGGATTTAGGTGTTGAGTATTTGGAAGAACTACTAAGTTTGACTTCT 672 52.98 MEFDNDLFGYPESFLWNNDLPFPGKENESYSHQWFDFNDSEEILLDMLAATAGGPPSSPDSSSCSTPAVNVKEELEEGSLSDLVQEGHAKKEERAYRGVRRRPWGKYAAEIRDSTRHGVRVWLGTFESAEAAALAYDQAAFCMRGALATLNFPVEVVRESLREMKYRWEAGCSPVVALKRRHSIWRKKMAEEEKMEKKMKKKKSVVVFEDLGVEYLEELLSLTS 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7684745 7685416 + MC09g0779 Mch9g0942 697824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g0942 224 SMART rav1_2 95 159 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch9g0942 224 ProSiteProfiles AP2/ERF domain profile. 95 153 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch9g0942 224 Pfam AP2 domain 96 145 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch9g0942 224 MobiDBLite consensus disorder prediction 55 69 - -
Mch9g0942 224 PANTHER DNA-BINDING DOMAIN 68 190 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Mch9g0942 224 Gene3D AP2/ERF domain 95 156 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch9g0942 224 CDD AP2 96 154 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch9g0942 224 PRINTS Ethylene responsive element binding protein signature 96 107 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch9g0942 224 PRINTS Ethylene responsive element binding protein signature 119 135 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch9g0942 224 FunFam Ethylene-responsive transcription factor 2 94 155 - -
Mch9g0942 224 SUPERFAMILY DNA-binding domain 95 155 IPR016177 GO:0003677(InterPro)
Mch9g0942 224 MobiDBLite consensus disorder prediction 50 70 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g2033 Mch-Chr6:22642161 Mch9g0942 Mch-Chr9:7684745 4.83E-59 dispersed
Mch7g0967 Mch-Chr7:14046891 Mch9g0942 Mch-Chr9:7684745 1.34E-47 dispersed
Mch9g0942 Mch-Chr9:7684745 Mch6g0009 Mch-Chr6:79499 3.66E-18 dispersed
Mch9g0939 Mch-Chr9:7655078 Mch9g0942 Mch-Chr9:7684745 1.06E-25 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44039 PF00847 AP2 7.70E-14 CL0081 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g0942 K14516 - csv:101205053 254.218