Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g1063 ATGGACAATCAATTCTTCCTCGACGCTGCTGGAATCCCTCCATCGCTTCTGCATTCTCCCATGCCCGCATGGCAGCAGCAGCAGCTTTCTTCCGCCATGGAAGTTCAACTTCCTGAGCTCAACCACTGCTCTTCCTCCCACCAATCTCCCGATTGGGACAAGTCCCTTCCCGATCGGACCTTCCACTTCGATTCCGCTCTCAGTTCCATGGTCTCTTCCCCTGCCGCCTCCAATTCCAACCTCACCACCGACGCCTTCGTCATCAGAGAATTGATCGGGAAATTGGCCGCTAATTCCGACGCCTCGCCCACTCTCTGTAATTCTTCCACCGTCGCGGAATTCGCCGCCGATCCTGGATTTGCGGAGCGCGCCGCTAGGTTTTCGTGCTTCGGAAGCCGGAGCTTCAATGGCCGCACCGCCACCGCCACCGCCAAATTGACGAACGAATTCGCCAATTACAGATCTCACCTCTCGATCGCGGACGAGAAATTGAGCCGAGTTTCGAGCAGTCCGTCGCTGAAGGCGCTCGCGCTTGGATCTGAAACGAATTTGCAAGAACACAAGAACAATTCTCCGCCGCTGGAAGAGGAATCGTCGCTCTCGAATCCGGAGAAGGCCTCGTCCAATCCACGGAAGAGAAAAGCGGTTACGAAAGCGGCCAAACTCAAGGAACCGGTGGCTGAAGCTGCAAGCCCGAAGAAATCCAAGGCAGCGGAAACGAAGGAAATCGTGAAATCAGAGGAAGATTCGAAGAAAATTAGCGACCGAAATGTGGCAGAGGAGAAGCAAACGAAGGCGAATTCGAAGCCTCCTGAGCCTCCAAAAGATTACATTCATGTCAGAGCAAGAAGAGGCCAAGCAACCGATAGCCATAGCCTTGCTGAAAGAGTTAGAAGAGAGAAGATCAGTGAAAGAATGAAGCTTCTTCAAGATCTTGTTCCTGGTTGCAACAAGGTTACTGGAAAAGCTCTCATGCTTGATGAGATAATCAACTATGTTCAGTCATTGCAACACCAAGTTGAGTTTCTTTCCATGAAACTGGCTTCTGTCAATACAACCACAACCAGGGTGGATTTCAACGTGGATTCTCTCCTCTCAAAACAAATGTACCAATCAAGCAGCTCTTTGACACATGCTCAAATTAGGCCTATAGATTCCTCAGCTTCAACTTTTTATGGGCACCAAAATCCCTCTCTCCCAACCACTTCTCATTCTTCTGTGGACCCTCTTGACTCTGTTTTATGCCTCAACCCCTTCCCCCAAAATCCTCCCCAGTATCCAAGTTTTGGGGAAGATGAGCTCCAAAGCATTGTTCAGATGGGGTTTCTCCAAAATCACACCCAAGAAATGTCATTGCAATCTCACAATTTCAACTTAGGTAAT 1383 49.82 MDNQFFLDAAGIPPSLLHSPMPAWQQQQLSSAMEVQLPELNHCSSSHQSPDWDKSLPDRTFHFDSALSSMVSSPAASNSNLTTDAFVIRELIGKLAANSDASPTLCNSSTVAEFAADPGFAERAARFSCFGSRSFNGRTATATAKLTNEFANYRSHLSIADEKLSRVSSSPSLKALALGSETNLQEHKNNSPPLEEESSLSNPEKASSNPRKRKAVTKAAKLKEPVAEAASPKKSKAAETKEIVKSEEDSKKISDRNVAEEKQTKANSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQHQVEFLSMKLASVNTTTTRVDFNVDSLLSKQMYQSSSSLTHAQIRPIDSSASTFYGHQNPSLPTTSHSSVDPLDSVLCLNPFPQNPPQYPSFGEDELQSIVQMGFLQNHTQEMSLQSHNFNLGN 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9814014 9816357 + MC09g0860 Mch9g1063 697945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g1063 461 CDD bHLH_AtBPE_like 276 364 - -
Mch9g1063 461 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 111 415 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Mch9g1063 461 MobiDBLite consensus disorder prediction 179 276 - -
Mch9g1063 461 MobiDBLite consensus disorder prediction 179 206 - -
Mch9g1063 461 Gene3D - 283 357 IPR036638 GO:0046983(InterPro)
Mch9g1063 461 FunFam Basic helix-loop-helix transcription factor 283 355 - -
Mch9g1063 461 Pfam Helix-loop-helix DNA-binding domain 290 337 IPR011598 GO:0046983(InterPro)
Mch9g1063 461 SMART finulus 292 342 IPR011598 GO:0046983(InterPro)
Mch9g1063 461 MobiDBLite consensus disorder prediction 227 276 - -
Mch9g1063 461 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 286 336 IPR011598 GO:0046983(InterPro)
Mch9g1063 461 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 284 351 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1319 Mch-Chr3:15993931 Mch9g1063 Mch-Chr9:9814014 3.57E-37 dispersed
Mch5g0843 Mch-Chr5:5925941 Mch9g1063 Mch-Chr9:9814014 2.14E-74 dispersed
Mch6g0195 Mch-Chr6:1306086 Mch9g1063 Mch-Chr9:9814014 2.55E-41 dispersed
Mch6g0634 Mch-Chr6:4333488 Mch9g1063 Mch-Chr9:9814014 7.63E-18 dispersed
Mch8g1269 Mch-Chr8:9196030 Mch9g1063 Mch-Chr9:9814014 8.07E-30 dispersed
Mch8g1988 Mch-Chr8:22052118 Mch9g1063 Mch-Chr9:9814014 1.06E-38 dispersed
Mch9g0913 Mch-Chr9:7244657 Mch9g1063 Mch-Chr9:9814014 3.17E-18 dispersed
Mch9g1063 Mch-Chr9:9814014 Mch9g2038 Mch-Chr9:21596402 1.40E-40 dispersed
Mch9g1063 Mch-Chr9:9814014 Mch4g1534 Mch-Chr4:18722502 1.17E-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44046 PF00010 HLH 3.40E-06 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g1063 - - - 0.0