Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g1064 ATGTCTCGAGGACCGAATTATGAGTTCCAAGAATGGTGGAACAAGCAGAGAGAGAGGAACCACGACGAACTCTCGCTGGAAAAGCCCGACAACTTCTCGGCCTCCCCTCCATTTCTCACCGTTGAGATCCCGAAACCTGGGGCTCCCGGAGATCGGACGGCTGATAAGGACCGGGTGAGAACACGGAGTGCCCGCCAGATTTCATGGGTATGGCTCTTGAAATTCCAGCAAATTGCTGGCTCCTTGGCCTCCATCACCAATGGCGTCGTTTACCTTATCCGCACTGCCAATCGTCGGATCGCGTCTCGAGATTCTCCAGCTGATTCAGCCTCATCTCGGCTCTATAGGGTTATCAAAGCCATTTTGATCATAGTGCTGCTATTGCTCGTCTTTGAGCTTGTGGCCTACTTCAATGGCTGGCACTTCAGCCCGCCGTCGGTGAGTTCCGCTTCAGCGGAGGTTCTTGGAATGATAGGCTTTCTGTATGCTAATTGGCTTGAGATTCGTGCAAATTACTTGGCTCCGCCACTACAGATCTTGATCAATATGTGCATTGTGCTGTTCCTGATCCAGTCAGTGGATCGTTTGGTTTTAATGCTAGGGTGTTTCTGGATCAAGTTCAGGCGATTGAAGCCTGTGGCAGCGTTCGAGTACTCCATCTCTGACGAAAATGGTGCTAGTCTTGATGATTATCCAATGGTGTTGGTGCAGATTCCCATGTGCAATGAGAGGGAGGTTTACCAACAATCTATTGCAGCTGTTTGTATCCAGGATTGGCCAAAGGATAAAATGCTTGTACAGGTTTTAGATGATTCTGATGAGCTAGATGTTCAACAACTTATCAAGGCTGAAGTACAAAAATGGCAACAGAGAGGTGTGCATATACTGTATAGACACCGCCTCATACGGACAGGATACAAGGCAGGGAATCTCAAATCTGCAATGGGGTGTGATTATGTGAAAGATTACGAGTTTGTCGCAATCTTTGATGCGGATTTTCAGCCAGGACCAGACTTTTTAAAGAAAACTATTCCACATTTCAAGGGGAATGATGAACTTGCATTGGTCCAAACAAGGTGGTCATTTGTGAACAAGGATGAAAACTTGCTCACAAGATTGCAGAACATAAATTTATCATTCCATTTCGAGGTCGAGCAGCAAGTAAATGGCATGTTTATCAACTTTTTTGGTTTCAATGGAACTGCTGGAGTCTGGAGAATTAAAGCTCTAGAAGAATGTGGGGGCTGGTTAGAAAGAACAACTGTTGAGGACATGGATATTGCTGTTCGTGCTCATCTTTTTGGCTGGAAGTTCATATATCTAAATGATGTGAAGTGCCTTTGTGAACTTCCAGAGTCATATGAAGCATACAAGAAACAGCAACACCGCTGGCATTCAGGCCCAATGCAGTTGTTTCGTTTGTGCTTCTCAGATATACTCAAATCAAAGATGAATTGGAAGAAGAAAGCTAATTTGATTTTTCTTTTCTTCCTCTTGCGAAAGCTCGTCCTTCCGTTTTATTCCTTTACCCTGTTCTGCATCATTCTCCCTCTGACCATGTTCCTTCCGGAAGCTCATCTACCGGCTTGGGTCGTTTGCTATGTTCCTGGAATCATGTCGATCTTAAATATTCTCCCCGCACCCCGGTCGTTTCCTTTTATAGTCCCCTATCTTCTATTTGAAAACACCATGTCCGTTACCAAATTCAATGCCATGATATCAGGGTTATTCCGCTTTGGAAGTTCATATGAATGGATAGTGACGAAAAAACTGGGAAGATCATCTGAAACCGATCTAGTTGCTTTTGAAAAAGAATTAGAACCTCTAGTTGAAAGTTCAGGTCTTCATCGATCGTCCTCAGATTCAGGTCTTCAGGAACTGACGAAGCTCGAGATATCAAAGAAAGCAGGGAAAGGCAAAAGAAACCGTCTGTACAGGAAGGAATTGGCTCTTGCAGTTATTTTGTTAACCGCCTCGGTGAGAAGTTTGTTATCTGCGCAAGGGATTCACTTCTACTTCCTATTATTTCAGGGCATCACTTTTCTAGTAGTCGGTCTCGATTTAATCGGAGAGCAGGTCAGTTAG 2085 44.6 MSRGPNYEFQEWWNKQRERNHDELSLEKPDNFSASPPFLTVEIPKPGAPGDRTADKDRVRTRSARQISWVWLLKFQQIAGSLASITNGVVYLIRTANRRIASRDSPADSASSRLYRVIKAILIIVLLLLVFELVAYFNGWHFSPPSVSSASAEVLGMIGFLYANWLEIRANYLAPPLQILINMCIVLFLIQSVDRLVLMLGCFWIKFRRLKPVAAFEYSISDENGASLDDYPMVLVQIPMCNEREVYQQSIAAVCIQDWPKDKMLVQVLDDSDELDVQQLIKAEVQKWQQRGVHILYRHRLIRTGYKAGNLKSAMGCDYVKDYEFVAIFDADFQPGPDFLKKTIPHFKGNDELALVQTRWSFVNKDENLLTRLQNINLSFHFEVEQQVNGMFINFFGFNGTAGVWRIKALEECGGWLERTTVEDMDIAVRAHLFGWKFIYLNDVKCLCELPESYEAYKKQQHRWHSGPMQLFRLCFSDILKSKMNWKKKANLIFLFFLLRKLVLPFYSFTLFCIILPLTMFLPEAHLPAWVVCYVPGIMSILNILPAPRSFPFIVPYLLFENTMSVTKFNAMISGLFRFGSSYEWIVTKKLGRSSETDLVAFEKELEPLVESSGLHRSSSDSGLQELTKLEISKKAGKGKRNRLYRKELALAVILLTASVRSLLSAQGIHFYFLLFQGITFLVVGLDLIGEQVS 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9871576 9880133 + MC09g0861 Mch9g1064 697946

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g1064 694 MobiDBLite consensus disorder prediction 23 57 - -
Mch9g1064 694 SUPERFAMILY Nucleotide-diphospho-sugar transferases 231 510 IPR029044 -
Mch9g1064 694 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 224 450 IPR029044 -
Mch9g1064 694 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 159 693 - GO:0005794(PANTHER)|GO:0016757(PANTHER)
Mch9g1064 694 FunFam probable xyloglucan glycosyltransferase 5 225 450 - -
Mch9g1064 694 Pfam Glycosyl transferase family group 2 326 528 IPR001173 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g1064 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0387 Mch-Chr11:2422199 Mch9g1064 Mch-Chr9:9871576 9.42E-302 dispersed
Mch9g1064 Mch-Chr9:9871576 Mch8g0605 Mch-Chr8:4329710 3.53E-304 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch2g1153 . 220 380 REM Transcription Factor Family AT1G49480 72.7 3.3e-58 221.9
Mch11g0635 . 1 696 REM Transcription Factor Family AT2G24630 76.6 0.0e+00 1079.7
Mch4g2242 . 2 673 REM Transcription Factor Family AT2G24630 69.0 9.1e-269 922.9
Mch11g0387 . 1 710 REM Transcription Factor Family AT2G24630 64.3 4.4e-263 904.0
Mch8g0605 . 5 701 REM Transcription Factor Family AT2G24630 65.0 5.5e-258 887.1
Mch9g1064 . 5 695 REM Transcription Factor Family AT2G24630 62.4 1.8e-245 845.5
Mch11g0635 . 1 696 REM Transcription Factor Family AT2G24630 76.6 0.0e+00 1079.7
Mch4g2242 . 2 673 REM Transcription Factor Family AT2G24630 69.0 9.1e-269 922.9
Mch11g0387 . 1 710 REM Transcription Factor Family AT2G24630 64.3 4.4e-263 904.0
Mch8g0605 . 5 701 REM Transcription Factor Family AT2G24630 65.0 5.5e-258 887.1
Mch9g1064 . 5 695 REM Transcription Factor Family AT2G24630 62.4 1.8e-245 845.5
Mch11g0635 . 1 696 REM Transcription Factor Family AT2G24630 76.6 0.0e+00 1079.7
Mch4g2242 . 2 673 REM Transcription Factor Family AT2G24630 69.0 9.1e-269 922.9
Mch11g0387 . 1 710 REM Transcription Factor Family AT2G24630 64.3 4.4e-263 904.0
Mch8g0605 . 5 701 REM Transcription Factor Family AT2G24630 65.0 5.5e-258 887.1
Mch9g1064 . 5 695 REM Transcription Factor Family AT2G24630 62.4 1.8e-245 845.5
Mch2g1153 . 220 380 REM Transcription Factor Family AT1G49480 72.7 3.3e-58 221.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007034 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 0 36