Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g1183 ATGAGTATGAAGATGCAGCAGAGCCACCACTCTGTGGCTGTGAGGTTTAATGAGCAAATAGCGAGCAAAAAGGGGGTTACATGCATTCAAGCCAATAGGGCTTGGCTTCCTAAGTTTCTGCTGCTTTGGATTCTGTTGGTGGCATTCATTAGTATGTTGATCTACAAAGGAATGGATGCTGATAACAAAGTTAGAAGAGAGGAAGTTCTTGGGAGCATGTGTGACCAAAGGGCAAGAATGCTTCAGGATCAATTTAGTGTCAGTGTCAACCATGTCCATGCCTTGGCTATTCTCATTTCCACTTTCCACTACTTCAAGAACATATCGGCCATCGATCAGGAAACTTTTGCCGAGTACACAGCTAGAACTGCTTTTGAGCGGCCTTTGCTTAGAGGTGTGGCGTTTGCACAAAGAGTGGTGCATTCTGAGCGAGAGAAATTCGAGAAGCAACACGGGTGGACTATAAAAACCATGGAAAGGGAAGTTTCACCTATAAGGGATGAGTATGCGCCAGTCATATTTTCACAGGAAACCGTTTCTTACATTGAATCTCTTGATATGATGTCTGGAGAGGAGGACCGCGAAAACATTTTGAGGTCGAGAGAAACAGGTAAAGCTGTTTTAACCAGCCCTTTCAGGTTACTGGGTTCTCATCATCTTGGAGTTGTGTTGACGATCCCGGTTTATAAAACCAAGCTTCCTGCAAATCCAACTATGGAGGAGCGAACTCGAGCAACAGCAGGTTACCTTGGTGGAGCCTTTGACGTGGAATCACTTGTGGAAAATTTGCTTGGGCAACTGGCTGGAAATCAAGCCATTTTGGTGAATGTACACGATATCACAAACTATTCCGATCCCCTAATAATGTACGGTTATCAATATGAAGATGGCGACATGTCCCTTTTGCATGAGAGCAAACTAGATTTTGGAGATCCATTTAGGAAGCACCAGATGATATGCAGGTATCATCAGAAAGCTCCAACATTATGGACTGCACTCACTACTGCATTTTTGTTCTTTGTGATTGGATTGTTGGTGGGATATATCCTATACGGTGCAGCGACTCATATCGTTAAAGTTGAGGACGATTTTCATGAAATGCAAGAGCTGAAAGGTCGAGCTGAAGCTGCTGATATCGCAAAATCTCAGTTTCTCGCCACCGTTTCTCACGAAATCAGGACACCTATGAATGGCATCCTTGGAATGCTTGCCCTACTTCTTGATACGGAGTTGAATTCGACTCAAAGGGATTATGCTCAAACTGCTCAGGCCTGTGGAAAAGCACTGATAGCGTTAATAAATGAGGTGCTCGACCGGGCGAAAATTGAAGCTGGGAAGTTGGAGCTCGAAGCGGTTCCTTTTGACCTTAGATTGATACTAGATGATGTTCTGTCTTTGTTTTCTGAAAAGTCAAGGCACAAGGGAGTAGAGTTGGCAGTATTTGTTTCTGATAAAGTTCCTGAAGTTGTTATGGGAGATCCTGGAAGGTTCAGACAAGTAGTCACAAATCTTGTGGGGAACTCAGTAAAATTCACAGAACGAGGACATATATTTGTTAAAGTTCAGTTAGCCGAACAATCAATGACCTCTACAATTATGAAATCTGAAACTCATGTGAACGGAAACTTAGATGACGGTGCATTGTACAATAAACATCAGTCTGAAACCTTAAGTGGGTGTGAGGCAGCTGATAACCAGAATAGTTGGGACACTTTTAAGCATCTAATTGCAAATGAGGAATTCCGACCGAACACTTCAAGCAATCTCTCGGTTACGAATGAAAGTTCTTCTGATATTGTTACTGTCATGATATCTGTGGAAGATACAGGAATCGGGATTCCGTTATGCGCCCAAGGTCGAGTTTTCATGCCCTTCATGCAGGCAGATAGCTCAACCTCCAGAAACTATGGTGGAACTGGTATTGGCTTAAGCATCAGTAAGTGTTTGGTCGAACTTATGGGCGGTCAGATAAACTTTGTGAGCCGGCCTCAGGTTGGAAGCACATTCTCCTTCACTGCTGTTTTTGGGAAATGTGAGAAGAAGGCAACCGTCGACATTAAAAAGTCTAATTTGGAGGAACTCCCTTCTGCTTTTAAAGGATTGAAGGCTGTCGTAATCGATGGTAAACCGGTTCGAGCTGCTGTGACTAAATACCATTTGAAGAGACTTGGCATCCTGGTTGAAATTTCCACTAGTGTCAAGATGGCTGCAGCATATGGGGGCAAAAATGGTTCTGTTAGATCAAGTAATATATTTCAGCCCGATGTAGTCCTTCTCGAGAAAGATATCTTTTTTTCAAATGAGGGATGTGGTTGTTCTAATCTACTTCATCAGCTGGACTGGAAGCAGAATGGTCATACCCTCAAGTTGCCGAAACTGATCCTTCTCGCGACCAGCATAAGCACTGCTGAATTCGATAAAGCGAAGGAAGCGGGTTTTTCGGACACCTTGATCATGAAACCACTGAGAGCAAGCATGATAGGTGCATGTCTTCAACAAGTGCTCGGCTCGGGAAAGAAACGACAGCTCGGGAAGGACATGGCCAATGGCCCCACTTTTCTTAGAGGGCTGCTTTGTGGTAAGAAAATATTGGTTGTTGATGACAATAGGGTAAACCGACGAGTTGCTGCGGGCGCTTTGAAGAAATTCGGTGCTGATGTTGAGTGTGCTGAGAGCGGCAAAGCTGCACTAGCATTGCTTCAACTTCCACACAGTTTTGATGCTTGCTTTATGGATATTCAGATGCCAGAAATGGATGGATTCGAAGCGACTAGAAGAATCAGGGAGATGGAGAGCAAGGAAAACGAGGTACTGGTTAGAGAATCTGGTGGCAAAGAAGATGCAAGGAAAGATGAATGGCACATTCCAATATTAGCCATGACAGCGGACGTATTTCAAGCTACGTACGAAAAGTGCCTGGAGTGTGGGATGGACGGATATGTATCGAAGCCATTCCAGGAAGAGAAACTTTATCAGGCAGTTTCCAAGTTTTTCAAATCGAAGCCTATCTCGGATTCATGA 3021 43.93 MSMKMQQSHHSVAVRFNEQIASKKGVTCIQANRAWLPKFLLLWILLVAFISMLIYKGMDADNKVRREEVLGSMCDQRARMLQDQFSVSVNHVHALAILISTFHYFKNISAIDQETFAEYTARTAFERPLLRGVAFAQRVVHSEREKFEKQHGWTIKTMEREVSPIRDEYAPVIFSQETVSYIESLDMMSGEEDRENILRSRETGKAVLTSPFRLLGSHHLGVVLTIPVYKTKLPANPTMEERTRATAGYLGGAFDVESLVENLLGQLAGNQAILVNVHDITNYSDPLIMYGYQYEDGDMSLLHESKLDFGDPFRKHQMICRYHQKAPTLWTALTTAFLFFVIGLLVGYILYGAATHIVKVEDDFHEMQELKGRAEAADIAKSQFLATVSHEIRTPMNGILGMLALLLDTELNSTQRDYAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDLRLILDDVLSLFSEKSRHKGVELAVFVSDKVPEVVMGDPGRFRQVVTNLVGNSVKFTERGHIFVKVQLAEQSMTSTIMKSETHVNGNLDDGALYNKHQSETLSGCEAADNQNSWDTFKHLIANEEFRPNTSSNLSVTNESSSDIVTVMISVEDTGIGIPLCAQGRVFMPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQINFVSRPQVGSTFSFTAVFGKCEKKATVDIKKSNLEELPSAFKGLKAVVIDGKPVRAAVTKYHLKRLGILVEISTSVKMAAAYGGKNGSVRSSNIFQPDVVLLEKDIFFSNEGCGCSNLLHQLDWKQNGHTLKLPKLILLATSISTAEFDKAKEAGFSDTLIMKPLRASMIGACLQQVLGSGKKRQLGKDMANGPTFLRGLLCGKKILVVDDNRVNRRVAAGALKKFGADVECAESGKAALALLQLPHSFDACFMDIQMPEMDGFEATRRIREMESKENEVLVRESGGKEDARKDEWHIPILAMTADVFQATYEKCLECGMDGYVSKPFQEEKLYQAVSKFFKSKPISDS 1006
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 12702790 12711101 + MC09g0904 Mch9g1183 698065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g1183 1006 Gene3D - 444 680 IPR036890 -
Mch9g1183 1006 SMART HisKA_10 380 445 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Mch9g1183 1006 CDD REC_hyHK_CKI1_RcsC-like 863 994 - -
Mch9g1183 1006 ProSiteProfiles CHASE domain profile. 107 319 IPR006189 -
Mch9g1183 1006 FunFam Histidine kinase 4 352 443 - -
Mch9g1183 1006 Pfam Response regulator receiver domain 863 994 IPR001789 GO:0000160(InterPro)
Mch9g1183 1006 Pfam His Kinase A (phospho-acceptor) domain 380 445 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Mch9g1183 1006 Gene3D - 857 1004 - -
Mch9g1183 1006 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 366 446 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Mch9g1183 1006 PRINTS Bacterial sensor protein C-terminal signature 637 655 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Mch9g1183 1006 PRINTS Bacterial sensor protein C-terminal signature 602 616 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Mch9g1183 1006 PRINTS Bacterial sensor protein C-terminal signature 661 674 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Mch9g1183 1006 PRINTS Bacterial sensor protein C-terminal signature 620 630 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Mch9g1183 1006 ProSiteProfiles Response regulatory domain profile. 862 998 IPR001789 GO:0000160(InterPro)
Mch9g1183 1006 Pfam CHASE domain 110 290 IPR006189 -
Mch9g1183 1006 PANTHER TWO-COMPONENT HISTIDINE KINASE 29 998 IPR050956 -
Mch9g1183 1006 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 590 672 IPR003594 -
Mch9g1183 1006 SMART CHASE_2 107 292 IPR006189 -
Mch9g1183 1006 CDD HisKA 380 441 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Mch9g1183 1006 SMART REC_2 861 994 IPR001789 GO:0000160(InterPro)
Mch9g1183 1006 CDD HATPase_EvgS-ArcB-TorS-like 497 675 - -
Mch9g1183 1006 ProSiteProfiles Histidine kinase domain profile. 387 677 IPR005467 -
Mch9g1183 1006 FunFam Histidine kinase 4 111 326 - -
Mch9g1183 1006 ProSiteProfiles Response regulatory domain profile. 702 835 IPR001789 GO:0000160(InterPro)
Mch9g1183 1006 Gene3D CHASE domain 111 326 IPR042240 -
Mch9g1183 1006 Coils Coil 430 450 - -
Mch9g1183 1006 SUPERFAMILY CheY-like 860 998 IPR011006 -
Mch9g1183 1006 SMART HKATPase_4 492 677 IPR003594 -
Mch9g1183 1006 FunFam Histidine kinase 3 856 1002 - -
Mch9g1183 1006 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 434 672 IPR036890 -
Mch9g1183 1006 Gene3D - 58 110 - -
Mch9g1183 1006 Gene3D - 353 443 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g1467 Mch-Chr4:18150559 Mch9g1183 Mch-Chr9:12702790 0 dispersed
Mch7g0079 Mch-Chr7:832106 Mch9g1183 Mch-Chr9:12702790 0 dispersed
Mch8g2520 Mch-Chr8:28121621 Mch9g1183 Mch-Chr9:12702790 2.73E-11 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44049 PF02518 HATPase_c 2.10E-31 CL0025 Mch TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g1183 K14489 - csv:101204531 1794.63