Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g1254 CCCATGGCTTCCTCCCGATTGGACCTCACCATCTCCGTCCCCGGCTTCGATTCGTTCCCGTCACTTCCTTCCTCTGTGAGAGATTTGGACATGAACCGAGCTCCGGAAGAAGAGGAATGGATGATGGGAAGCATGGAAGAGGATGAAGAAATTAGTAACAATAATAATGGTGGAGGCCATCCAAGGAAGAAGCTGCGTTTGACAAAGGAACAGTCTCATCTTCTTGAACAAACCTTCAGACAAAACCATACCTTAAACCCAAAACAGAAGGAAGCTCTGGCGGAAATGTTGAAATTGAAGCCACGGCAAGTTGAGGTTTGGTTTCAGAACCGACGGGCCAGGAGCAAGCTAAAGCAGACGGAGATGGAGTGCGAGTATCTAAAGAGATGGTTCGGGTTATTGACCGAGCAAAACAAAAGACTACAGAAGGAGGTCGAGGAGCTAAGGGCGATGAAGGCGCCGCCGCCAACGGTGATCTCACCGCACAGCTGCGAGCCGCTTCCGGCGTCGAACCTCACCATGTGCCCTCGCTGCGAGCGCGTGACCACCACCGCCCTCGACAAGACCCGCATTGTCGTCTAA 582 52.58 PMASSRLDLTISVPGFDSFPSLPSSVRDLDMNRAPEEEEWMMGSMEEDEEISNNNNGGGHPRKKLRLTKEQSHLLEQTFRQNHTLNPKQKEALAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKAPPPTVISPHSCEPLPASNLTMCPRCERVTTTALDKTRIVV 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 14358901 14363666 - MC09g0947 Mch9g1254 698136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g1254 193 SUPERFAMILY Homeodomain-like 44 119 IPR009057 -
Mch9g1254 193 SMART HOX_1 60 122 IPR001356 GO:0003677(InterPro)
Mch9g1254 193 SMART halz 118 161 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch9g1254 193 CDD homeodomain 61 119 IPR001356 GO:0003677(InterPro)
Mch9g1254 193 ProSiteProfiles 'Homeobox' domain profile. 58 118 IPR001356 GO:0003677(InterPro)
Mch9g1254 193 Coils Coil 131 151 - -
Mch9g1254 193 Gene3D - 42 125 - -
Mch9g1254 193 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 43 185 IPR050762 -
Mch9g1254 193 ProSitePatterns 'Homeobox' domain signature. 93 116 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Mch9g1254 193 Pfam Homeodomain 62 116 IPR001356 GO:0003677(InterPro)
Mch9g1254 193 FunFam Homeobox-leucine zipper protein 18 46 123 - -
Mch9g1254 193 Pfam Homeobox associated leucine zipper 118 152 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g0968 Mch-Chr8:6886615 Mch9g1254 Mch-Chr9:14358901 1.48E-32 dispersed
Mch9g0512 Mch-Chr9:3807043 Mch9g1254 Mch-Chr9:14358901 1.19E-41 dispersed
Mch9g1254 Mch-Chr9:14358901 Mch9g2169 Mch-Chr9:22368225 4.65E-12 dispersed
Mch9g1254 Mch-Chr9:14358901 Mch5g1450 Mch-Chr5:15582998 1.48E-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44051 PF00046 Homeodomain 5.70E-17 CL0123 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g1254 K09338 - csv:101222713 329.717