Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch9g1254 | CCCATGGCTTCCTCCCGATTGGACCTCACCATCTCCGTCCCCGGCTTCGATTCGTTCCCGTCACTTCCTTCCTCTGTGAGAGATTTGGACATGAACCGAGCTCCGGAAGAAGAGGAATGGATGATGGGAAGCATGGAAGAGGATGAAGAAATTAGTAACAATAATAATGGTGGAGGCCATCCAAGGAAGAAGCTGCGTTTGACAAAGGAACAGTCTCATCTTCTTGAACAAACCTTCAGACAAAACCATACCTTAAACCCAAAACAGAAGGAAGCTCTGGCGGAAATGTTGAAATTGAAGCCACGGCAAGTTGAGGTTTGGTTTCAGAACCGACGGGCCAGGAGCAAGCTAAAGCAGACGGAGATGGAGTGCGAGTATCTAAAGAGATGGTTCGGGTTATTGACCGAGCAAAACAAAAGACTACAGAAGGAGGTCGAGGAGCTAAGGGCGATGAAGGCGCCGCCGCCAACGGTGATCTCACCGCACAGCTGCGAGCCGCTTCCGGCGTCGAACCTCACCATGTGCCCTCGCTGCGAGCGCGTGACCACCACCGCCCTCGACAAGACCCGCATTGTCGTCTAA | 582 | 52.58 | PMASSRLDLTISVPGFDSFPSLPSSVRDLDMNRAPEEEEWMMGSMEEDEEISNNNNGGGHPRKKLRLTKEQSHLLEQTFRQNHTLNPKQKEALAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKAPPPTVISPHSCEPLPASNLTMCPRCERVTTTALDKTRIVV | 193 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 14358901 | 14363666 | - | MC09g0947 | Mch9g1254 | 698136 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch9g1254 | 193 | SUPERFAMILY | Homeodomain-like | 44 | 119 | IPR009057 | - | |
Mch9g1254 | 193 | SMART | HOX_1 | 60 | 122 | IPR001356 | GO:0003677(InterPro) | |
Mch9g1254 | 193 | SMART | halz | 118 | 161 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch9g1254 | 193 | CDD | homeodomain | 61 | 119 | IPR001356 | GO:0003677(InterPro) | |
Mch9g1254 | 193 | ProSiteProfiles | 'Homeobox' domain profile. | 58 | 118 | IPR001356 | GO:0003677(InterPro) | |
Mch9g1254 | 193 | Coils | Coil | 131 | 151 | - | - | |
Mch9g1254 | 193 | Gene3D | - | 42 | 125 | - | - | |
Mch9g1254 | 193 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 | 43 | 185 | IPR050762 | - | |
Mch9g1254 | 193 | ProSitePatterns | 'Homeobox' domain signature. | 93 | 116 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Mch9g1254 | 193 | Pfam | Homeodomain | 62 | 116 | IPR001356 | GO:0003677(InterPro) | |
Mch9g1254 | 193 | FunFam | Homeobox-leucine zipper protein 18 | 46 | 123 | - | - | |
Mch9g1254 | 193 | Pfam | Homeobox associated leucine zipper | 118 | 152 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch8g0968 | Mch-Chr8:6886615 | Mch9g1254 | Mch-Chr9:14358901 | 1.48E-32 | dispersed | |
Mch9g0512 | Mch-Chr9:3807043 | Mch9g1254 | Mch-Chr9:14358901 | 1.19E-41 | dispersed | |
Mch9g1254 | Mch-Chr9:14358901 | Mch9g2169 | Mch-Chr9:22368225 | 4.65E-12 | dispersed | |
Mch9g1254 | Mch-Chr9:14358901 | Mch5g1450 | Mch-Chr5:15582998 | 1.48E-42 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
44051 | PF00046 | Homeodomain | 5.70E-17 | CL0123 | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch9g1254 | K09338 | - | csv:101222713 | 329.717 |