Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g1288 ATGAACAATCGGACGGGACTTCTTCGAATTCGCCTGCTGCGAGGCGTTAATCTCGCCATTCGCGATGCTACCACCCGCAGCAGCGATCCTTACGTCGTCATCTCCACTGCTCATCAGAAATTTAAATCTCGTGTGGTGAAAAAAAACTGCAATCCAGAATGGAACGAGGAATTCACGCTTTCGATTACGGATATCAACAATCCAATTAAACTAGCAGTGTTCGACAAGGATCGGTTCACAAAAGACGACGGAATGGGGAGTGCAAAGATCGACATAAAACCATACATAGAGTGTTTGAACATGGGACTGGAGAATCTGCCAAATGGATGCGTGGTGAAAAGGGTTCAGCCAAGCAGATCAAACAACCTTGCAGATGAGAGCCCATGCGTTTGGAACGATGGTAAGATCGTCCAAGACATGACTCTCAGATTGGAGAATGCTGAATGTGGAGAAGTCATGATTCAGATTCAGCTGTTCAATGCTGCTGGGATCAAAGGCCTTAGAACCAACTCTTTGGCCTGA 522 46.36 MNNRTGLLRIRLLRGVNLAIRDATTRSSDPYVVISTAHQKFKSRVVKKNCNPEWNEEFTLSITDINNPIKLAVFDKDRFTKDDGMGSAKIDIKPYIECLNMGLENLPNGCVVKRVQPSRSNNLADESPCVWNDGKIVQDMTLRLENAECGEVMIQIQLFNAAGIKGLRTNSLA 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 14944469 14946287 - MC09g0969 Mch9g1288 698170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g1288 173 PRINTS C2 domain signature 24 36 IPR000008 -
Mch9g1288 173 PRINTS C2 domain signature 48 61 IPR000008 -
Mch9g1288 173 PRINTS C2 domain signature 69 77 IPR000008 -
Mch9g1288 173 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 1 163 IPR044562 -
Mch9g1288 173 SMART C2_3c 7 104 IPR000008 -
Mch9g1288 173 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 160 IPR035892 -
Mch9g1288 173 ProSiteProfiles C2 domain profile. 1 108 IPR000008 -
Mch9g1288 173 Gene3D C2 domain 1 166 IPR035892 -
Mch9g1288 173 Pfam C2 domain 6 94 IPR000008 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g2285 Mch-Chr8:25933817 Mch9g1288 Mch-Chr9:14944469 3.83E-58 dispersed
Mch9g1288 Mch-Chr9:14944469 Mch9g1741 Mch-Chr9:19382350 4.19E-30 dispersed
Mch9g1288 Mch-Chr9:14944469 Mch4g1416 Mch-Chr4:17631385 5.09E-76 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g1288 - - - 0.0