Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g1301 ATGGCCGGTATTGTCGCCGGCGAGAGCGACAGTTCGCCGCCGGCGCTTGCTCTACTGGGGTTTGTTCGCGATGTCGTTCGAATGTCAGCGGGGATGAACAGTGGTGGAGAGGTTTTCAAGAGGGATTGCACCGATCTGGTGCGTCGGATTGTGCTTCTGACACATTTGTTTGAGGAGATCAGAGATTTTAAGGGCCTCGAATTTGATGCTTCCACTTCTTCTTCTTCTTCTTCGTCTTCTGCTGCTGTTACTGCGAGGGATTCGTCTCCGTTTCCATGGCTGTCTGATTTAGTGGCGGCATTGAAGGATGCTAAGCGCCTCATTTTCATCGCTTCGACTTTCCGTTCCTGCAGTTCTTCTGAAGAAGTTGCCAAGAAGATACTCTTCCAGTTCCAATGTGTGACATGGAAGTTAGAGAAGGCGCTGGGAAATCTTCCATATGATTGCTTTGATATATCAGAGGAAGTTCAAGAGCAGGTTGAATTAGTGAGAGCTCAGCTGAGAAGGGCAGCAGAAAAATATGGATCTCTGACTGCAATTCCGCTGTCGGTCGTTCAATCTCAGTTGCTGAAGAAAAACATGGATCTGTTGAATCTGAACAACTGGGCTGAAACTTTTGATGTTGAAGAGGGTGGCATTGTAGATCACGAGATTACAGTGAAATTTGATGCTTTTCAAAATTGTAGAGGCTTGATGAATAATGGAGTGGATCAGCTGAGTTTCAAAGGACTTGACAAACTTCCATCCTCTTCTGATGGGCAGGATGACTCTGCCAAAAAGAGTGGAGACCAGGTTAAGAGCCCAGATGGAGTTTCAATACCTGATGATTTTTTATGCCCCATATCCTTGGAAATAATGAGGGATCCTGTTATTGTGTCCACAGGCCAGACGTATGAGAGATCTTATGTACAGAGGTGGATAGATTGTGGGAATACTACTTGTCCCAAAACTCAGCAGAAACTCCAAAATTTGACTCTCACCCCAAATTATGTGTTGCGGAGTCTTATTAGCCAGTGGTGTGTGAAGCACAATATTGAACAACCAACAGGATTAACAAATGGGAAGATCAAAAAGTGCGATGGATCGTACCGTGATGTTTGTGAGGAGATGGCAGCGATCGAATCTATTGTCCGCAAGCTAACTAGCCATTCGATCGAGGAGCGGAGAGCTTCGGTGACTGAACTTCGATCTCTATCTAAAAGAAGCACAGATAATAGAATACTGATCGCTGAAGCAGGAGCGATTCCTGCATTGGTCAATCTGTTAACTGCTGATGATGTTTTAATACAAGAAAATGCAGTTACTTCGATTCTGAACCTTTCAATATATGAGAATAACAAGGGACTGATTATGCTTGCTGGTGCAGTACCTTCCATTGTTCAAGTTCTGAGAGTTGGAAGCATGGAAGCCAGAGAAAATGCAGCAGCAACACTTTTCAGCTTGTCTCTTGCTGATGAAAACAGGATCATTATTGGTGCTTCCGGGGCGATTACGGCTCTGGTGGACTTACTTGAAAACGGAAGCTCACGAGGGAAGAAGGACGCTGCAACGGCACTATTCAATTTGTGTATTTATCAGGGGAACAAGGGGAGGGCTGTGAGGGCAGGGATCGTTCCAGCCCTGTTAAAGATGCTTACGGACTCGATCAATTCGATGGTCGATGAAGCTCTTACTATAATGTCGGTTCTCGCCAGCCATCAAGAAGCAAAGGTAGCCATGGTGAAGGCCAGTAGCATCCCTGTCTTAATAGACCTGCTGAGGACTGGATTGCCTCGCAACAAAGAAAATGCTGCTGCCATTTTGCTTGCGTTGTGTAAGCGAGATACCGACAATCTTTCTTGCATAAGCAGGCTCGGCGCCGTGATTCCTTTGACAGAGCTTGCAAAGAGCGGCACGGAGAGGGCGAAAAGGAAGGCTACTTCACTGTTGGAGCATCTAAGGAAGCTACAGCAGGTATAA 1959 45.99 MAGIVAGESDSSPPALALLGFVRDVVRMSAGMNSGGEVFKRDCTDLVRRIVLLTHLFEEIRDFKGLEFDASTSSSSSSSSAAVTARDSSPFPWLSDLVAALKDAKRLIFIASTFRSCSSSEEVAKKILFQFQCVTWKLEKALGNLPYDCFDISEEVQEQVELVRAQLRRAAEKYGSLTAIPLSVVQSQLLKKNMDLLNLNNWAETFDVEEGGIVDHEITVKFDAFQNCRGLMNNGVDQLSFKGLDKLPSSSDGQDDSAKKSGDQVKSPDGVSIPDDFLCPISLEIMRDPVIVSTGQTYERSYVQRWIDCGNTTCPKTQQKLQNLTLTPNYVLRSLISQWCVKHNIEQPTGLTNGKIKKCDGSYRDVCEEMAAIESIVRKLTSHSIEERRASVTELRSLSKRSTDNRILIAEAGAIPALVNLLTADDVLIQENAVTSILNLSIYENNKGLIMLAGAVPSIVQVLRVGSMEARENAAATLFSLSLADENRIIIGASGAITALVDLLENGSSRGKKDAATALFNLCIYQGNKGRAVRAGIVPALLKMLTDSINSMVDEALTIMSVLASHQEAKVAMVKASSIPVLIDLLRTGLPRNKENAAAILLALCKRDTDNLSCISRLGAVIPLTELAKSGTERAKRKATSLLEHLRKLQQV 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 15216303 15220117 - MC09g0981 Mch9g1301 698183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g1301 652 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 346 IPR013083 -
Mch9g1301 652 FunFam RING-type E3 ubiquitin transferase 552 651 - -
Mch9g1301 652 SUPERFAMILY ARM repeat 363 646 IPR016024 -
Mch9g1301 652 CDD RING-Ubox_PUB 274 326 IPR045210 -
Mch9g1301 652 Gene3D - 454 549 IPR011989 -
Mch9g1301 652 SMART Ubox_2 276 339 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch9g1301 652 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 536 578 IPR000225 GO:0005515(InterPro)
Mch9g1301 652 Pfam U-box domain 273 344 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch9g1301 652 SMART arm_5 566 606 IPR000225 GO:0005515(InterPro)
Mch9g1301 652 SMART arm_5 525 565 IPR000225 GO:0005515(InterPro)
Mch9g1301 652 SMART arm_5 608 648 IPR000225 GO:0005515(InterPro)
Mch9g1301 652 SMART arm_5 402 442 IPR000225 GO:0005515(InterPro)
Mch9g1301 652 SMART arm_5 484 524 IPR000225 GO:0005515(InterPro)
Mch9g1301 652 SMART arm_5 443 483 IPR000225 GO:0005515(InterPro)
Mch9g1301 652 Gene3D - 550 652 IPR011989 -
Mch9g1301 652 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 454 496 IPR000225 GO:0005515(InterPro)
Mch9g1301 652 Coils Coil 153 173 - -
Mch9g1301 652 Gene3D - 355 453 IPR011989 -
Mch9g1301 652 FunFam RING-type E3 ubiquitin transferase 450 550 - -
Mch9g1301 652 FunFam RING-type E3 ubiquitin transferase 356 449 - -
Mch9g1301 652 MobiDBLite consensus disorder prediction 247 273 - -
Mch9g1301 652 FunFam RING-type E3 ubiquitin transferase 272 347 - -
Mch9g1301 652 Pfam Armadillo/beta-catenin-like repeat 402 441 IPR000225 GO:0005515(InterPro)
Mch9g1301 652 Pfam Armadillo/beta-catenin-like repeat 485 523 IPR000225 GO:0005515(InterPro)
Mch9g1301 652 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 413 455 IPR000225 GO:0005515(InterPro)
Mch9g1301 652 PANTHER U BOX DOMAIN-CONTAINING 38 648 - -
Mch9g1301 652 SUPERFAMILY RING/U-box 269 347 - -
Mch9g1301 652 ProSiteProfiles U-box domain profile. 272 346 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g0294 Mch-Chr3:4172226 Mch9g1301 Mch-Chr9:15216303 1.12E-62 dispersed
Mch4g1391 Mch-Chr4:17381754 Mch9g1301 Mch-Chr9:15216303 1.91E-95 dispersed
Mch4g2494 Mch-Chr4:25696194 Mch9g1301 Mch-Chr9:15216303 2.49E-29 dispersed
Mch6g0824 Mch-Chr6:5704302 Mch9g1301 Mch-Chr9:15216303 1.58E-18 dispersed
Mch8g0100 Mch-Chr8:579458 Mch9g1301 Mch-Chr9:15216303 1.14E-23 dispersed
Mch9g0958 Mch-Chr9:7909022 Mch9g1301 Mch-Chr9:15216303 7.22E-21 dispersed
Mch9g1301 Mch-Chr9:15216303 Mch9g2354 Mch-Chr9:23503244 2.41E-20 dispersed
Mch9g1301 Mch-Chr9:15216303 Mch3g1460 Mch-Chr3:16894727 2.89E-35 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g1301 - - - 0.0