Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g1301 ATGGCCGGTATTGTCGCCGGCGAGAGCGACAGTTCGCCGCCGGCGCTTGCTCTACTGGGGTTTGTTCGCGATGTCGTTCGAATGTCAGCGGGGATGAACAGTGGTGGAGAGGTTTTCAAGAGGGATTGCACCGATCTGGTGCGTCGGATTGTGCTTCTGACACATTTGTTTGAGGAGATCAGAGATTTTAAGGGCCTCGAATTTGATGCTTCCACTTCTTCTTCTTCTTCTTCGTCTTCTGCTGCTGTTACTGCGAGGGATTCGTCTCCGTTTCCATGGCTGTCTGATTTAGTGGCGGCATTGAAGGATGCTAAGCGCCTCATTTTCATCGCTTCGACTTTCCGTTCCTGCAGTTCTTCTGAAGAAGTTGCCAAGAAGATACTCTTCCAGTTCCAATGTGTGACATGGAAGTTAGAGAAGGCGCTGGGAAATCTTCCATATGATTGCTTTGATATATCAGAGGAAGTTCAAGAGCAGGTTGAATTAGTGAGAGCTCAGCTGAGAAGGGCAGCAGAAAAATATGGATCTCTGACTGCAATTCCGCTGTCGGTCGTTCAATCTCAGTTGCTGAAGAAAAACATGGATCTGTTGAATCTGAACAACTGGGCTGAAACTTTTGATGTTGAAGAGGGTGGCATTGTAGATCACGAGATTACAGTGAAATTTGATGCTTTTCAAAATTGTAGAGGCTTGATGAATAATGGAGTGGATCAGCTGAGTTTCAAAGGACTTGACAAACTTCCATCCTCTTCTGATGGGCAGGATGACTCTGCCAAAAAGAGTGGAGACCAGGTTAAGAGCCCAGATGGAGTTTCAATACCTGATGATTTTTTATGCCCCATATCCTTGGAAATAATGAGGGATCCTGTTATTGTGTCCACAGGCCAGACGTATGAGAGATCTTATGTACAGAGGTGGATAGATTGTGGGAATACTACTTGTCCCAAAACTCAGCAGAAACTCCAAAATTTGACTCTCACCCCAAATTATGTGTTGCGGAGTCTTATTAGCCAGTGGTGTGTGAAGCACAATATTGAACAACCAACAGGATTAACAAATGGGAAGATCAAAAAGTGCGATGGATCGTACCGTGATGTTTGTGAGGAGATGGCAGCGATCGAATCTATTGTCCGCAAGCTAACTAGCCATTCGATCGAGGAGCGGAGAGCTTCGGTGACTGAACTTCGATCTCTATCTAAAAGAAGCACAGATAATAGAATACTGATCGCTGAAGCAGGAGCGATTCCTGCATTGGTCAATCTGTTAACTGCTGATGATGTTTTAATACAAGAAAATGCAGTTACTTCGATTCTGAACCTTTCAATATATGAGAATAACAAGGGACTGATTATGCTTGCTGGTGCAGTACCTTCCATTGTTCAAGTTCTGAGAGTTGGAAGCATGGAAGCCAGAGAAAATGCAGCAGCAACACTTTTCAGCTTGTCTCTTGCTGATGAAAACAGGATCATTATTGGTGCTTCCGGGGCGATTACGGCTCTGGTGGACTTACTTGAAAACGGAAGCTCACGAGGGAAGAAGGACGCTGCAACGGCACTATTCAATTTGTGTATTTATCAGGGGAACAAGGGGAGGGCTGTGAGGGCAGGGATCGTTCCAGCCCTGTTAAAGATGCTTACGGACTCGATCAATTCGATGGTCGATGAAGCTCTTACTATAATGTCGGTTCTCGCCAGCCATCAAGAAGCAAAGGTAGCCATGGTGAAGGCCAGTAGCATCCCTGTCTTAATAGACCTGCTGAGGACTGGATTGCCTCGCAACAAAGAAAATGCTGCTGCCATTTTGCTTGCGTTGTGTAAGCGAGATACCGACAATCTTTCTTGCATAAGCAGGCTCGGCGCCGTGATTCCTTTGACAGAGCTTGCAAAGAGCGGCACGGAGAGGGCGAAAAGGAAGGCTACTTCACTGTTGGAGCATCTAAGGAAGCTACAGCAGGTATAA 1959 45.99 MAGIVAGESDSSPPALALLGFVRDVVRMSAGMNSGGEVFKRDCTDLVRRIVLLTHLFEEIRDFKGLEFDASTSSSSSSSSAAVTARDSSPFPWLSDLVAALKDAKRLIFIASTFRSCSSSEEVAKKILFQFQCVTWKLEKALGNLPYDCFDISEEVQEQVELVRAQLRRAAEKYGSLTAIPLSVVQSQLLKKNMDLLNLNNWAETFDVEEGGIVDHEITVKFDAFQNCRGLMNNGVDQLSFKGLDKLPSSSDGQDDSAKKSGDQVKSPDGVSIPDDFLCPISLEIMRDPVIVSTGQTYERSYVQRWIDCGNTTCPKTQQKLQNLTLTPNYVLRSLISQWCVKHNIEQPTGLTNGKIKKCDGSYRDVCEEMAAIESIVRKLTSHSIEERRASVTELRSLSKRSTDNRILIAEAGAIPALVNLLTADDVLIQENAVTSILNLSIYENNKGLIMLAGAVPSIVQVLRVGSMEARENAAATLFSLSLADENRIIIGASGAITALVDLLENGSSRGKKDAATALFNLCIYQGNKGRAVRAGIVPALLKMLTDSINSMVDEALTIMSVLASHQEAKVAMVKASSIPVLIDLLRTGLPRNKENAAAILLALCKRDTDNLSCISRLGAVIPLTELAKSGTERAKRKATSLLEHLRKLQQV 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 15216303 15220117 - MC09g0981 Mch9g1301 698183

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g1301 652 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 346 IPR013083 -
Mch9g1301 652 FunFam RING-type E3 ubiquitin transferase 552 651 - -
Mch9g1301 652 SUPERFAMILY ARM repeat 363 646 IPR016024 -
Mch9g1301 652 CDD RING-Ubox_PUB 274 326 IPR045210 -
Mch9g1301 652 Gene3D - 454 549 IPR011989 -
Mch9g1301 652 SMART Ubox_2 276 339 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch9g1301 652 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 536 578 IPR000225 GO:0005515(InterPro)
Mch9g1301 652 Pfam U-box domain 273 344 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch9g1301 652 SMART arm_5 566 606 IPR000225 GO:0005515(InterPro)
Mch9g1301 652 SMART arm_5 525 565 IPR000225 GO:0005515(InterPro)
Mch9g1301 652 SMART arm_5 608 648 IPR000225 GO:0005515(InterPro)
Mch9g1301 652 SMART arm_5 402 442 IPR000225 GO:0005515(InterPro)
Mch9g1301 652 SMART arm_5 484 524 IPR000225 GO:0005515(InterPro)
Mch9g1301 652 SMART arm_5 443 483 IPR000225 GO:0005515(InterPro)
Mch9g1301 652 Gene3D - 550 652 IPR011989 -
Mch9g1301 652 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 454 496 IPR000225 GO:0005515(InterPro)
Mch9g1301 652 Coils Coil 153 173 - -
Mch9g1301 652 Gene3D - 355 453 IPR011989 -
Mch9g1301 652 FunFam RING-type E3 ubiquitin transferase 450 550 - -
Mch9g1301 652 FunFam RING-type E3 ubiquitin transferase 356 449 - -
Mch9g1301 652 MobiDBLite consensus disorder prediction 247 273 - -
Mch9g1301 652 FunFam RING-type E3 ubiquitin transferase 272 347 - -
Mch9g1301 652 Pfam Armadillo/beta-catenin-like repeat 402 441 IPR000225 GO:0005515(InterPro)
Mch9g1301 652 Pfam Armadillo/beta-catenin-like repeat 485 523 IPR000225 GO:0005515(InterPro)
Mch9g1301 652 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 413 455 IPR000225 GO:0005515(InterPro)
Mch9g1301 652 PANTHER U BOX DOMAIN-CONTAINING 38 648 - -
Mch9g1301 652 SUPERFAMILY RING/U-box 269 347 - -
Mch9g1301 652 ProSiteProfiles U-box domain profile. 272 346 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g1301 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g0294 Mch-Chr3:4172226 Mch9g1301 Mch-Chr9:15216303 1.12E-62 dispersed
Mch4g1391 Mch-Chr4:17381754 Mch9g1301 Mch-Chr9:15216303 1.91E-95 dispersed
Mch4g2494 Mch-Chr4:25696194 Mch9g1301 Mch-Chr9:15216303 2.49E-29 dispersed
Mch6g0824 Mch-Chr6:5704302 Mch9g1301 Mch-Chr9:15216303 1.58E-18 dispersed
Mch8g0100 Mch-Chr8:579458 Mch9g1301 Mch-Chr9:15216303 1.14E-23 dispersed
Mch9g0958 Mch-Chr9:7909022 Mch9g1301 Mch-Chr9:15216303 7.22E-21 dispersed
Mch9g1301 Mch-Chr9:15216303 Mch9g2354 Mch-Chr9:23503244 2.41E-20 dispersed
Mch9g1301 Mch-Chr9:15216303 Mch3g1460 Mch-Chr3:16894727 2.89E-35 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch8g2434 . 1 985 U-box Gene Family AT5G15400 76.4 0.0e+00 1507.7
Mch2g1291 . 196 838 U-box Gene Family AT2G23140 65.6 2.0e-121 433.3
Mch8g0100 . 1 769 U-box Gene Family AT1G24330 60.8 1.8e-249 859.0
Mch9g2354 . 1 582 U-box Gene Family AT1G24330 65.4 7.4e-211 730.7
Mch8g0100 . 1 768 U-box Gene Family AT1G67530 60.2 1.0e-247 853.2
Mch9g2354 . 1 582 U-box Gene Family AT1G67530 64.8 3.3e-206 715.3
Mch1g1805 . 1 362 U-box Gene Family AT4G21350 62.6 1.7e-120 429.5
Mch6g2246 . 4 273 U-box Gene Family AT3G07360 61.0 4.9e-71 265.0
Mch9g1301 . 250 447 U-box Gene Family AT1G71020 68.5 1.4e-74 277.3
Mch4g1391 . 702 901 U-box Gene Family AT1G71020 54.0 5.5e-55 212.2
Mch3g0294 . 258 427 U-box Gene Family AT1G71020 57.2 2.5e-47 186.8
Mch2g0908 . 257 427 U-box Gene Family AT1G71020 54.2 2.0e-44 177.2
Mch9g1301 . 17 651 U-box Gene Family AT1G23030 57.1 1.8e-111 400.2
Mch2g0908 . 94 637 U-box Gene Family AT2G28830 52.2 9.5e-102 367.9
Mch3g0294 . 91 638 U-box Gene Family AT2G28830 58.8 6.2e-101 365.2
Mch3g0294 . 1 643 U-box Gene Family AT3G46510 68.0 6.9e-165 577.8
Mch2g0908 . 9 637 U-box Gene Family AT3G46510 67.3 6.2e-158 554.7
Mch2g0908 . 13 630 U-box Gene Family AT3G54850 56.4 1.8e-109 393.7
Mch3g0294 . 8 631 U-box Gene Family AT3G54850 54.4 1.1e-100 364.4
Mch9g1807 . 1 279 U-box Gene Family AT3G54850 79.9 9.2e-50 195.3
Mch2g0424 . 173 724 U-box Gene Family AT5G42340 63.4 2.5e-114 409.8
Mch3g1054 . 1 712 U-box Gene Family AT1G29340 64.7 1.8e-251 865.5
Mch8g2291 . 27 442 U-box Gene Family AT5G37490 51.4 5.8e-112 401.4
Mch1g0580 . 13 414 U-box Gene Family AT3G52450 53.3 1.4e-118 423.3
Mch1g0580 . 13 414 U-box Gene Family AT2G35930 55.2 2.7e-119 425.6
Mch2g0219 . 7 406 U-box Gene Family AT2G35930 51.4 2.4e-115 412.5
Mch10g0491 . 1 415 U-box Gene Family AT3G19380 63.9 2.4e-147 518.8
Mch10g0491 . 1 415 U-box Gene Family AT1G49780 64.8 3.9e-153 538.1
Mch11g0376 . 5 455 U-box Gene Family AT3G49810 64.6 2.7e-157 552.0
Mch8g0620 . 6 446 U-box Gene Family AT3G49810 62.4 2.0e-152 535.8
Mch11g0376 . 5 455 U-box Gene Family AT5G65920 63.6 3.4e-152 535.0
Mch8g0620 . 6 446 U-box Gene Family AT5G65920 64.6 1.1e-150 530.0
Mch10g0145 . 208 705 U-box Gene Family AT3G49060 50.2 4.9e-138 488.8
Mch5g0393 . 1 880 U-box Gene Family AT2G45910 52.8 1.1e-231 800.0
Mch7g0670 . 1 300 U-box Gene Family AT2G45910 62.8 3.0e-109 393.3
Mch7g0671 . 1 142 U-box Gene Family AT2G45910 57.0 6.4e-43 172.9
Mch8g0371 . 227 515 U-box Gene Family AT2G19410 56.4 4.2e-92 336.3
Mch6g2652 . 25 811 U-box Gene Family AT4G25160 53.6 5.5e-228 787.7
Mch8g0371 . 214 520 U-box Gene Family AT4G25160 53.4 5.6e-87 319.3
Mch6g0178 . 1 288 U-box Gene Family AT5G65200 55.7 7.8e-53 205.3
Mch4g2245 . 12 551 U-box Gene Family AT5G40140 53.6 2.8e-95 346.3
Mch3g1473 . 24 485 U-box Gene Family AT5G40140 52.4 4.2e-59 226.1
Mch6g0178 . 1 283 U-box Gene Family AT5G62560 59.9 2.1e-50 197.2
Mch8g0100 . 1 772 U-box Gene Family AT1G27910 64.0 3.0e-273 937.9
Mch9g2354 . 1 582 U-box Gene Family AT1G27910 64.3 9.3e-206 713.8
Mch1g1286 . 1 592 U-box Gene Family AT5G67530 74.7 1.4e-262 902.1
Mch5g0327 . 3 162 U-box Gene Family AT5G67530 51.3 4.6e-43 172.9
Mch5g1593 . 12 150 U-box Gene Family AT5G67530 50.4 9.9e-38 155.2
Mch8g0371 . 217 513 U-box Gene Family AT5G61560 52.8 3.8e-85 313.2
Mch6g2652 . 26 813 U-box Gene Family AT5G61550 50.9 4.4e-225 778.1
Mch8g0371 . 227 514 U-box Gene Family AT5G61550 54.7 1.1e-85 315.1
Mch8g0371 . 227 514 U-box Gene Family AT5G51270 51.5 9.8e-81 298.5
Mch5g0126 . 1 516 U-box Gene Family AT1G04510 74.2 3.4e-223 771.2
Mch5g0126 . 1 485 U-box Gene Family AT2G33340 73.5 6.7e-210 726.9
Mch6g2247 . 10 278 U-box Gene Family AT3G07370 65.4 1.2e-99 359.8
Mch8g2434 . 1 985 U-box Gene Family AT5G15400 76.4 0.0e+00 1507.7
Mch2g1291 . 196 838 U-box Gene Family AT2G23140 65.6 2.0e-121 433.3
Mch8g0100 . 1 769 U-box Gene Family AT1G24330 60.8 1.8e-249 859.0
Mch9g2354 . 1 582 U-box Gene Family AT1G24330 65.4 7.4e-211 730.7
Mch8g0100 . 1 768 U-box Gene Family AT1G67530 60.2 1.0e-247 853.2
Mch9g2354 . 1 582 U-box Gene Family AT1G67530 64.8 3.3e-206 715.3
Mch1g1805 . 1 362 U-box Gene Family AT4G21350 62.6 1.7e-120 429.5
Mch6g2246 . 4 273 U-box Gene Family AT3G07360 61.0 4.9e-71 265.0
Mch9g1301 . 250 447 U-box Gene Family AT1G71020 68.5 1.4e-74 277.3
Mch4g1391 . 702 901 U-box Gene Family AT1G71020 54.0 5.5e-55 212.2
Mch3g0294 . 258 427 U-box Gene Family AT1G71020 57.2 2.5e-47 186.8
Mch2g0908 . 257 427 U-box Gene Family AT1G71020 54.2 2.0e-44 177.2
Mch9g1301 . 17 651 U-box Gene Family AT1G23030 57.1 1.8e-111 400.2
Mch2g0908 . 94 637 U-box Gene Family AT2G28830 52.2 9.5e-102 367.9
Mch3g0294 . 91 638 U-box Gene Family AT2G28830 58.8 6.2e-101 365.2
Mch3g0294 . 1 643 U-box Gene Family AT3G46510 68.0 6.9e-165 577.8
Mch2g0908 . 9 637 U-box Gene Family AT3G46510 67.3 6.2e-158 554.7
Mch2g0908 . 13 630 U-box Gene Family AT3G54850 56.4 1.8e-109 393.7
Mch3g0294 . 8 631 U-box Gene Family AT3G54850 54.4 1.1e-100 364.4
Mch9g1807 . 1 279 U-box Gene Family AT3G54850 79.9 9.2e-50 195.3
Mch2g0424 . 173 724 U-box Gene Family AT5G42340 63.4 2.5e-114 409.8
Mch3g1054 . 1 712 U-box Gene Family AT1G29340 64.7 1.8e-251 865.5
Mch8g2291 . 27 442 U-box Gene Family AT5G37490 51.4 5.8e-112 401.4
Mch1g0580 . 13 414 U-box Gene Family AT3G52450 53.3 1.4e-118 423.3
Mch1g0580 . 13 414 U-box Gene Family AT2G35930 55.2 2.7e-119 425.6
Mch2g0219 . 7 406 U-box Gene Family AT2G35930 51.4 2.4e-115 412.5
Mch10g0491 . 1 415 U-box Gene Family AT3G19380 63.9 2.4e-147 518.8
Mch10g0491 . 1 415 U-box Gene Family AT1G49780 64.8 3.9e-153 538.1
Mch11g0376 . 5 455 U-box Gene Family AT3G49810 64.6 2.7e-157 552.0
Mch8g0620 . 6 446 U-box Gene Family AT3G49810 62.4 2.0e-152 535.8
Mch11g0376 . 5 455 U-box Gene Family AT5G65920 63.6 3.4e-152 535.0
Mch8g0620 . 6 446 U-box Gene Family AT5G65920 64.6 1.1e-150 530.0
Mch10g0145 . 208 705 U-box Gene Family AT3G49060 50.2 4.9e-138 488.8
Mch5g0393 . 1 880 U-box Gene Family AT2G45910 52.8 1.1e-231 800.0
Mch7g0670 . 1 300 U-box Gene Family AT2G45910 62.8 3.0e-109 393.3
Mch7g0671 . 1 142 U-box Gene Family AT2G45910 57.0 6.4e-43 172.9
Mch8g0371 . 227 515 U-box Gene Family AT2G19410 56.4 4.2e-92 336.3
Mch6g2652 . 25 811 U-box Gene Family AT4G25160 53.6 5.5e-228 787.7
Mch8g0371 . 214 520 U-box Gene Family AT4G25160 53.4 5.6e-87 319.3
Mch6g0178 . 1 288 U-box Gene Family AT5G65200 55.7 7.8e-53 205.3
Mch4g2245 . 12 551 U-box Gene Family AT5G40140 53.6 2.8e-95 346.3
Mch3g1473 . 24 485 U-box Gene Family AT5G40140 52.4 4.2e-59 226.1
Mch6g0178 . 1 283 U-box Gene Family AT5G62560 59.9 2.1e-50 197.2
Mch8g0100 . 1 772 U-box Gene Family AT1G27910 64.0 3.0e-273 937.9
Mch9g2354 . 1 582 U-box Gene Family AT1G27910 64.3 9.3e-206 713.8
Mch1g1286 . 1 592 U-box Gene Family AT5G67530 74.7 1.4e-262 902.1
Mch5g0327 . 3 162 U-box Gene Family AT5G67530 51.3 4.6e-43 172.9
Mch5g1593 . 12 150 U-box Gene Family AT5G67530 50.4 9.9e-38 155.2
Mch8g0371 . 217 513 U-box Gene Family AT5G61560 52.8 3.8e-85 313.2
Mch6g2652 . 26 813 U-box Gene Family AT5G61550 50.9 4.4e-225 778.1
Mch8g0371 . 227 514 U-box Gene Family AT5G61550 54.7 1.1e-85 315.1
Mch8g0371 . 227 514 U-box Gene Family AT5G51270 51.5 9.8e-81 298.5
Mch5g0126 . 1 516 U-box Gene Family AT1G04510 74.2 3.4e-223 771.2
Mch5g0126 . 1 485 U-box Gene Family AT2G33340 73.5 6.7e-210 726.9
Mch6g2247 . 10 278 U-box Gene Family AT3G07370 65.4 1.2e-99 359.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005370 2 1 2 1 2 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 2 1 40