Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g1305 ATGACGAAGTCCAAGAGTTTGTTTCAGAATCTCATCAGACCCTTCAGAATCGGTTCCTCCAGAGAGAGCCAGGGCGAGGAGGATTTGGAGCAGATTGCAGCTAAGGAACAGAAGCTTATTCCGTTCGAAACCTTAGTTGAAGCCACCAACAATTTTCACCCGAATCACAAGCTTGGCGAAGGTGGTTTTGGTCCAGTTTACAAGGGAAAGTTAAAGGATGGAAGAGAGATTGCAGTTAAGAAGTTATCTCATTATTCAAAGCAAGGGAGAAAAGAGTTCATGACTGAGGCCAAGTTGTTGGCTCGTGTGCAGCATCGGAATGTCGTCAATTTGTTGGGATACTGTGCACATGGAACAGAGAAACTACTAGTTTACGAATACGTAACGAATGAGAGCCTCGACAAGCTTCTCTTCAAATCCATCCGACGAGGAGATCTTGATTGGAAGAGGAGATATGACATAATCTTTGGTGTAGCCAGGGGCTTGCAATATCTTCACGTAGACTCACATAATGTCATTATTCATCGTGACATTAAGGCAAGCAACATTTTGTTGGATGATAAATGGGTCCCTAAGATTGCAGATTTTGGGATGGCCCGACTTTTCCCTGAAGATCAAACTCATGTTAATACTCGCGTTGCTGGTACAAATGGATATATGGCTCCAGAATACGTAATGCACGGGCATTTGTCAGCAAAGGCAGATGTTTTTAGCTTTGGTGTTTTGGTTCTGGAACTCATCAGTGGCCAGCGGAACTCGTCGTTTAGTTCATTTGTTGACGCTGAGAATCTACTCGATTGGGCTTATAAGCTATACAAGAAGGGCAGGAGCTTGGAGATCATGGACCCAACATTGGCATCATCAGCTGTTCCTGACCAAGTTGCAATGTGCGTTCAGATAGGATTGCTGTGCACACAAGGCGATCCGCAACTACGACCGACCATGCCGCGTGTAGTTTTGACCCTCTCAAGGAAACCTGGTGCTCTGGAGGAACCAACGAGACCGGGAATACCCGGTTCTCGGTATAGACGATCTCGTAGAACAAGTGCATCGTCATCCGCTGCTGGAACTTCTGGTGCATCTGATTCCTATGCTTCAACGACCAATACCGTTACTGGAACTATAACTGCAACTGCAACTGCTACCGAAACTGCAACTGCTGCTGAAACTGCTTCTGCTTCGACTTCAGTTAGTCGAGGATTCGATACTCGTGGGAAACGTCCCATAGAAGGTTAG 1236 45.95 MTKSKSLFQNLIRPFRIGSSRESQGEEDLEQIAAKEQKLIPFETLVEATNNFHPNHKLGEGGFGPVYKGKLKDGREIAVKKLSHYSKQGRKEFMTEAKLLARVQHRNVVNLLGYCAHGTEKLLVYEYVTNESLDKLLFKSIRRGDLDWKRRYDIIFGVARGLQYLHVDSHNVIIHRDIKASNILLDDKWVPKIADFGMARLFPEDQTHVNTRVAGTNGYMAPEYVMHGHLSAKADVFSFGVLVLELISGQRNSSFSSFVDAENLLDWAYKLYKKGRSLEIMDPTLASSAVPDQVAMCVQIGLLCTQGDPQLRPTMPRVVLTLSRKPGALEEPTRPGIPGSRYRRSRRTSASSSAAGTSGASDSYASTTNTVTGTITATATATETATAAETASASTSVSRGFDTRGKRPIEG 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 15283138 15287884 + MC09g0985 Mch9g1305 698187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g1305 411 ProSiteProfiles Protein kinase domain profile. 52 328 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch9g1305 411 FunFam Cysteine-rich receptor-like protein kinase 10 129 334 - -
Mch9g1305 411 Gene3D Transferase(Phosphotransferase) domain 1 128 330 - -
Mch9g1305 411 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 32 356 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Mch9g1305 411 MobiDBLite consensus disorder prediction 324 368 - -
Mch9g1305 411 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch9g1305 411 Gene3D Phosphorylase Kinase; domain 1 16 127 - -
Mch9g1305 411 FunFam Cysteine-rich receptor-like protein kinase 10 16 127 - -
Mch9g1305 411 MobiDBLite consensus disorder prediction 344 368 - -
Mch9g1305 411 MobiDBLite consensus disorder prediction 381 411 - -
Mch9g1305 411 Pfam Protein tyrosine and serine/threonine kinase 55 319 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch9g1305 411 MobiDBLite consensus disorder prediction 381 401 - -
Mch9g1305 411 SUPERFAMILY Protein kinase-like (PK-like) 36 322 IPR011009 -
Mch9g1305 411 CDD STKc_IRAK 58 324 - -
Mch9g1305 411 SMART serkin_6 52 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch9g0396 Mch-Chr9:2973891 Mch9g1305 Mch-Chr9:15283138 1.01E-88 dispersed
Mch9g1305 Mch-Chr9:15283138 Mch9g2261 Mch-Chr9:22937256 3.22E-85 dispersed
Mch9g1305 Mch-Chr9:15283138 Mch11g1127 Mch-Chr11:7892222 4.21E-95 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77697 PF00069 Pkinase 2.30E-49 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g1305 - - - 0.0