Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g1315 ATGGCCGATCAGTCGAGTCTCGCGTCCAGCCCCAGCAAAGAAGGCGCCGAGAAGAACGTGCTGCAGAGACACGTGGCGTTCTTTGACAGGAACCACGACGGCGTCGTTTACCCCTGGGAGACCTTCAAAGGCTTCCGTGCCATTGGGGCCGGTCTGCTCTTGTCCACCGTCAGTGCGGTTTTTATTAACGTTGGGCTCAGTACAAAAACCCGACCGGGAAAATTTCCTAATCTCCTATTCCCAATTGAAATAAAGAACATTCATCTTGCCAAACATGGAAGTGATTCTGGTGTATATGACACTGAGGGAAGGTTTGTTGCCTCAAAATTTGAAGAAATTTTCAAGAACCACGCAAAAACTTATCCTGATGCCTTGACAGAAGAAGAGCTTAAAGCCTTGCTTATGGGAAATAGAGAGCCCAAAAACTACGTGGGATGGTTTGCTAGCTACGCCGAGTGGACAACTCTGTACAATCTTTGCAAAGACGACAATGGTTTGCTTCAAAAGCACACTGTGAAAGCTGTTTATGATGGAAGCTTATTTGAACATATGGAGAAACAGAGAGAATTGACAACAAAGAAGAAATGA 588 45.75 MADQSSLASSPSKEGAEKNVLQRHVAFFDRNHDGVVYPWETFKGFRAIGAGLLLSTVSAVFINVGLSTKTRPGKFPNLLFPIEIKNIHLAKHGSDSGVYDTEGRFVASKFEEIFKNHAKTYPDALTEEELKALLMGNREPKNYVGWFASYAEWTTLYNLCKDDNGLLQKHTVKAVYDGSLFEHMEKQRELTTKKK 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 15450120 15454698 - MC09g0992 Mch9g1315 698197

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g1315 195 PANTHER PEROXYGENASE 3-RELATED 13 191 IPR007736 GO:0004497(PANTHER)|GO:0005509(PANTHER)
Mch9g1315 195 Pfam Caleosin related protein 17 184 IPR007736 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g1315 K17991 - - csv:101213829 313.153
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g2537 Mch-Chr8:28439217 Mch9g1315 Mch-Chr9:15450120 8.82E-59 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch9g1315 . 20 194 Pollen Coat Proteome AT1G23240 56.6 2.1e-57 219.2
Mch9g1315 . 20 194 Pollen Coat Proteome AT1G23240 56.6 2.1e-57 219.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007695 2 1 0 0 3 1 2 1 1 0 1 1 2 1 1 2 1 2 1 1 1 1 2 1 1 1 1 2 1 1 36