Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g1356 ATGGTTTCCAGGTCGTACTCTAATTTACTCGAGCTCGCCACCGGAGAATCGCCGTCTTTCGGCCGTATGAACCGCCAGATTCCGCGGATTATGACCGTCGCCGGCTTAATCTCCGACGTCGACGACGACCCATCGGAGAGCGTGTCGTCGGAGCCGTCGTCCTCCTCCGCCCCACGCGACCGGATAATCATCGTCGCCAATGAGCTCCCCATCAGAGCCCACCGGAAATCCACCGCCTCCGCCGGCTGGACCTTCAGTTGGGATGAGAATTCACTCCTCCTCCAGCTGAAAGATGGCTTAGGAGACGATGATTTTGAGGTAATTTATGTTGGTTGTCTTAAGGAAGATGTTCATCCAAATGAACAAGATGAGGTCTCTCAAATACTTTTGGAAACTTTTAAATGTGTTCCCACATTTCTCACACAAGATCTTTACACTAGATATTACCATGGCTTCTGCAAGCAGCAGCTATGGCCTCTGTTTCATTACATGCTCCCGCTGTCGCCCGACCTCGGCGGTCGGTTTAACCGGCCGCTGTGGCAGGCTTATGTTTCTGTGAATAAGATCTTTGCTGATAGGATTATGGAAGTGATCAATCCTGAGGATGATTTTGTTTGGATTCATGATTATCATCTTATGGTGTTGCCTACTTTCTTGAGGAAGAGATTCAATAGGGTCAAGCTTGGGTTCTTTCTGCATAGTCCATTCCCGTCCTCGGAGATATATCGGACGCTCCCAATTCGGGAGGAGCTCTTGCGGGCCCTCTTGAATTCGGATTTGATAGGGTTCCATACGTTTGATTATGCTCGGCATTTTCTATCTTGTTGTAGTCGAATGCTCGGTCTAACGTACGAGTCGAAGCGGGGGTATATCGGGATAGAGTACTACGGTCGAACGATTAGTATCAAGATCCTTCCTGTTGGGATTCATATGGGTCAGCTTCAATCTGTTTTGAGTCTTCAGAAAACAGAGGAGAAAGTTAGTGAGCTTATTAAGCAATTTCGCGATCGGGGTAGGATAATGTTGCTCGGAGTTGACGACATGGACATATTCAAGGGGATAAGTTTGAAGCTATTGGCTATGGAGCAGCTGTTGATCACACACCCTGAGTGGCAGGGGAAAGTAGTATTGGTGCAGATCGCCAATCCTGCGAGAGGCCGAGGGAAAGATGTGAAAGAAGTTCAGGACGAGACGAAGGCAACTGTTAAGCGGATTAACAAAATGTTTGGGAAGCCTGGGTATGAGCCAGTTGTGTTGATTGAGGAACCACTAAAATTCTACGAGAGAATCGCATATTATACTGTTGCCGAGTGTTGTTTGGTCACTGCTGTTCGAGATGGTATGAATCTCATTCCGTATGAGTACATTGTCAGTCGCCAAGGAAACGATAAGTTGGATCAAATTTTGGGGTGTGAATCATCAGCACCAAAGAAGAGTATGTTGGTTATCTCCGAATTTATCGGGTGCTCTCCATCCTTAAGTGGAGCAATCCGAGTTAATCCCTGGAATATTGATGCTGTAGCAGACGCAATGGAATGTGCATTGGAGATTGAAGAGGCCGAAAAGGAGCTTCGCCATGAGAAGCATTTTAGATATGTCAGCTCGCACGATGTCGGGTATTGGGCTCGGAGTTTCCTTCAAGATTTGGAGAGGACTTGTAGGGACCATGTGAGGCACCGATGTTGGGGTATCGGGTTTGGTTTAAGTTTTAGAGTTGTAGCTCTTGATCCCAACTTTAGGAAGCTCGCAATGGAGCACATAATTTCAACTTACAAGAGAACGAAATCTCGAGCTATTCTTCTGGATTATGATGGTACTTTAATGCCTCAAGCTTCGGTTGACAAGAGTCCTACTTCGAAATGCCTCGAAACTCTTAATGCCTTATGTCGGGATAAGAACAATATGGTATTCATTGTCAGTGCAAAAGGACGAAAGACACTTGCTGAATGGTTTGCGCCATGTGAAAAGATCGGCCTTGCTGCCGAGCACGGATATTTTATCAGGCTAAAGCAAGATGAGGAATGGGAAACCAGTTTTCCAGTTGCAGATGGCTATTGGAAGGAGATGGTGCAGCCAGTGATGAAACTCTACACTGAAACGACCGATGGATCAACAATTGAAGATCGAGAAACCGCAGTCGGATGGTGTTATGAAGATGCAGATCCAGATTTTGGTTCTTGTCAAGCTAAGGAGCTCTTCGATCATCTTGAAAGCGTTCTAGCCAATGAACCAGTTACTGTCAAAAGTGGACAAAATATTGTGGAAGTAAAACCTCAGGGTGTCAGTAAGGGTCTCGTGGCGAAACGACTTCTCTCCGTGATGCAAGAGAAGGGGACGCCTGCGGATTTTGTTCTCTGCATTGGCGACGACAGATCGGATGAAGACATGTTCAAGGTGATCTCAAGTTCCCTGGCCGGCCCATCGATCACCCCCCGAGCTGAAATTTTCGCTTGCACGGTAGGTAAGAAACCAAGCAAAGCCAAGTATTATCTCGACGATCCATCCGAGATCGCGAGGTTGATGCATGGTTTGGCTTCGGTGTCGAGGCAGAACGTCCCGCCTTACCCGCCCCGAAGCTAA 2580 47.25 MVSRSYSNLLELATGESPSFGRMNRQIPRIMTVAGLISDVDDDPSESVSSEPSSSSAPRDRIIIVANELPIRAHRKSTASAGWTFSWDENSLLLQLKDGLGDDDFEVIYVGCLKEDVHPNEQDEVSQILLETFKCVPTFLTQDLYTRYYHGFCKQQLWPLFHYMLPLSPDLGGRFNRPLWQAYVSVNKIFADRIMEVINPEDDFVWIHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYRTLPIREELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLTYESKRGYIGIEYYGRTISIKILPVGIHMGQLQSVLSLQKTEEKVSELIKQFRDRGRIMLLGVDDMDIFKGISLKLLAMEQLLITHPEWQGKVVLVQIANPARGRGKDVKEVQDETKATVKRINKMFGKPGYEPVVLIEEPLKFYERIAYYTVAECCLVTAVRDGMNLIPYEYIVSRQGNDKLDQILGCESSAPKKSMLVISEFIGCSPSLSGAIRVNPWNIDAVADAMECALEIEEAEKELRHEKHFRYVSSHDVGYWARSFLQDLERTCRDHVRHRCWGIGFGLSFRVVALDPNFRKLAMEHIISTYKRTKSRAILLDYDGTLMPQASVDKSPTSKCLETLNALCRDKNNMVFIVSAKGRKTLAEWFAPCEKIGLAAEHGYFIRLKQDEEWETSFPVADGYWKEMVQPVMKLYTETTDGSTIEDRETAVGWCYEDADPDFGSCQAKELFDHLESVLANEPVTVKSGQNIVEVKPQGVSKGLVAKRLLSVMQEKGTPADFVLCIGDDRSDEDMFKVISSSLAGPSITPRAEIFACTVGKKPSKAKYYLDDPSEIARLMHGLASVSRQNVPPYPPRS 859
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 15890577 15894568 + MC09g1018 Mch9g1356 698238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g1356 859 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 553 - -
Mch9g1356 859 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 54 315 - -
Mch9g1356 859 NCBIfam trehalose-phosphatase 595 844 IPR003337 GO:0005992(InterPro)
Mch9g1356 859 FunFam Alpha,alpha-trehalose-phosphate synthase 317 534 - -
Mch9g1356 859 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 596 713 - -
Mch9g1356 859 CDD GT20_TPS 61 550 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Mch9g1356 859 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 24 847 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
Mch9g1356 859 Gene3D - 596 711 IPR023214 -
Mch9g1356 859 Gene3D - 726 853 IPR023214 -
Mch9g1356 859 FunFam Trehalose-6-phosphate synthase 10 727 854 - -
Mch9g1356 859 Gene3D Glycogen Phosphorylase B; 317 534 - -
Mch9g1356 859 FunFam Trehalose-6-phosphate synthase 2 680 759 - -
Mch9g1356 859 Pfam Glycosyltransferase family 20 61 550 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Mch9g1356 859 Gene3D Glycogen Phosphorylase B; 54 316 - -
Mch9g1356 859 Pfam Trehalose-phosphatase 600 835 IPR003337 GO:0005992(InterPro)
Mch9g1356 859 NCBIfam HAD-IIB family hydrolase 599 800 IPR006379 -
Mch9g1356 859 CDD HAD_TPP 598 836 - -
Mch9g1356 859 SUPERFAMILY HAD-like 597 842 IPR036412 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1678 Mch-Chr10:16832707 Mch9g1356 Mch-Chr9:15890577 0 dispersed
Mch1g1429 Mch-Chr1:16049624 Mch9g1356 Mch-Chr9:15890577 2.17E-10 dispersed
Mch1g1957 Mch-Chr1:19307295 Mch9g1356 Mch-Chr9:15890577 0 dispersed
Mch3g1040 Mch-Chr3:14029602 Mch9g1356 Mch-Chr9:15890577 2.80E-136 dispersed
Mch6g0163 Mch-Chr6:1098180 Mch9g1356 Mch-Chr9:15890577 0 dispersed
Mch8g0202 Mch-Chr8:1342291 Mch9g1356 Mch-Chr9:15890577 6.04E-09 dispersed
Mch9g1356 Mch-Chr9:15890577 Mch9g2224 Mch-Chr9:22716852 0 dispersed
Mch9g1356 Mch-Chr9:15890577 Mch4g0135 Mch-Chr4:891787 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g1356 K16055 - vvi:100252552 1469.52