Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch9g1370 | ATGGAGACCTCGGCTTCCAATTCTGATCCTTTCTCCAATTCTTCGTCACCCACTACTGCTCGTAGCTCCTCCAGATTTGGGTTGTCTCTCCCTTCGATGAATTTCTTCCGTTCGCCTTTGTCCGTCATCTTGGATTACTCCGGGATTCTGCCCACCAGGGCTGTTCGTCACGAATCCGAGCCTGTCCCCGTCAACGGCGCTGCGACGCCTGATTTGCGAGTTTTTTCTCAGAATCATAATCACTTGATCACTCCTTCTTCTTCTTCTTCTTCTTCTTCTACTGCCACCACCTCATCCGGTAATTCCAGCCCCTCTGGGGAGGTCTCGATCAGGATTATTGGGTCTGGCGAGCAAGATCCTTCTTCTAGTGGCTTGCTGCCATCTCAGGCTCTGGTGGGACAGGCTGGTTATGAACAAAATAGCGGACGTTCTGTTTCCGGGGATCAGCCGGAATCCCCTGATGAGGAACGTGTTCCCTTGGTGCCCACCGCTTCTTCATCTATTCAATCTGGAAGCAGTCGCGTCGACGGAGAATCTGGAAATGGCGTGGAGGAGAGTGTCAATAGAGACTCGTCTTATCAGAGATACGATATTCAACAGGTTGCCAGATGGATTGAACAGATTCTTCCATTCTCTTTGCTACTGCTGATAGTCTTTATCCGTCAGCATTTAGAAGGTTTTTTCATCACAATTTGGATATCAGCTGTTATGTATAAGTCAAACGATATTGTCAAGAAACAGACTGCTCTAAAGGGAGAGAGGAAAATTTCTGTCCTTGCTGGTACTTCTATCGCATTTTTGGTTCATGTAATTGGAATTTACTGGTGGTCTCATACTGACGATCTTCTGTACCCACTGGTCATGCTTCCACCAAAGACAGTACCACCTTTTTGGCATGCCTTGTTCATCATTTTGGTTAACGATACAATGGCGAGGCAGGTTGCAATGGCTCTCAAGTGTTTTCTGCTTATTTACTACAAGAATGGCAGAGGCCATAATTTTCGTCGACAGGGTCAAATTTTAACTCTCGTGGAATACACTCTTCTGTTGTACCGTGCATTATTACCAACACCTGTATGGTACCGGTTCTTCTTGAACAAAGATCAAGGAAGCCTCTTTTCATCGCTGACAACAGGATTATATTTAACTTTCAAGCTAACGTCTATTGTTGAGAAGATTCAATCATTCGTTGCTGCATTTAAGGCCCTGTCACGGAAAGAAGTTCATTATGGATCATATGCCACATCAGAACAGGCAAGTACACTTATTCTGTCTGTAAATGCTGCGGGAGATCTCTGTGCTATTTGCCAGGAGAAGATGAATGCTCCAATCCTGTTACGTTGCAAGCACATCTTCTGTGAAGATTGTGTTTCTGAATGGTTTGAAAGAGAAAGAACTTGCCCTCTTTGTCGGGCACTGGTAAAGCCTGCAGAACTTCGAACATTTGGTGATGGGTCAACTAGCTTACTCTTCCAGTTGTTTTAA | 1485 | 45.19 | METSASNSDPFSNSSSPTTARSSSRFGLSLPSMNFFRSPLSVILDYSGILPTRAVRHESEPVPVNGAATPDLRVFSQNHNHLITPSSSSSSSSTATTSSGNSSPSGEVSIRIIGSGEQDPSSSGLLPSQALVGQAGYEQNSGRSVSGDQPESPDEERVPLVPTASSSIQSGSSRVDGESGNGVEESVNRDSSYQRYDIQQVARWIEQILPFSLLLLIVFIRQHLEGFFITIWISAVMYKSNDIVKKQTALKGERKISVLAGTSIAFLVHVIGIYWWSHTDDLLYPLVMLPPKTVPPFWHALFIILVNDTMARQVAMALKCFLLIYYKNGRGHNFRRQGQILTLVEYTLLLYRALLPTPVWYRFFLNKDQGSLFSSLTTGLYLTFKLTSIVEKIQSFVAAFKALSRKEVHYGSYATSEQASTLILSVNAAGDLCAICQEKMNAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPAELRTFGDGSTSLLFQLF | 494 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 16099831 | 16107555 | - | MC09g1028 | Mch9g1370 | 698252 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch9g1370 | 494 | ProSiteProfiles | Zinc finger RING-type profile. | 433 | 471 | IPR001841 | - | |
| Mch9g1370 | 494 | ProSitePatterns | Zinc finger RING-type signature. | 448 | 457 | IPR017907 | - | |
| Mch9g1370 | 494 | MobiDBLite | consensus disorder prediction | 136 | 189 | - | - | |
| Mch9g1370 | 494 | Pfam | Ring finger domain | 432 | 471 | IPR001841 | - | |
| Mch9g1370 | 494 | MobiDBLite | consensus disorder prediction | 162 | 189 | - | - | |
| Mch9g1370 | 494 | CDD | RING-HC_RNFT1-like | 431 | 471 | - | - | |
| Mch9g1370 | 494 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 413 | 490 | IPR013083 | - | |
| Mch9g1370 | 494 | SMART | ring_2 | 433 | 470 | IPR001841 | - | |
| Mch9g1370 | 494 | MobiDBLite | consensus disorder prediction | 81 | 109 | - | - | |
| Mch9g1370 | 494 | PANTHER | UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN | 14 | 494 | IPR044235 | GO:0061630(InterPro)|GO:0061630(PANTHER)|GO:1904294(InterPro) | |
| Mch9g1370 | 494 | SUPERFAMILY | RING/U-box | 429 | 476 | - | - | |
| Mch9g1370 | 494 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch1g0595 | Mch-Chr1:10143153 | Mch9g1370 | Mch-Chr9:16099831 | 9.30E-192 | dispersed |
Pathway information