Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g1380 TCTATGGAGGCTTCTTCTTCTTTGGATTGGGATTCTGAAATTGGGTTCCAGCCCCATGTTCTAGCTGTTGACGATAATCTCGTCGACCGTAAACTCGTCGAGAAGTTGCTCAAGAACTCCGCTTGTAAAGTAACAACAGCAGAAAATGGTCGCAGTGCTTTGGAGTTTCTGGGTTTATTGGATGATCATCAACACAGCAACTTAGAACGTAGGAGTAGATCGAAGGTGAACATGATCATCACAGATTATTGCATGCCTGGCATGTCTGGATATGAACTCCTCAAAAGGATTAAGAGATCGTCGATAATGAAGGAAGTTCCCGTGGTGATCGTATCATCAGAAAACGTCCCCACTCGCATCAACAAGTGTTTAGAGGAAGGAGCTGAGATGTTCATGTTGAAACCTTTGAAGCAATCTGATGTGGTGAAACTACTGAAATGCCAGATGATGAACTGA 456 43.42 SMEASSSLDWDSEIGFQPHVLAVDDNLVDRKLVEKLLKNSACKVTTAENGRSALEFLGLLDDHQHSNLERRSRSKVNMIITDYCMPGMSGYELLKRIKRSSIMKEVPVVIVSSENVPTRINKCLEEGAEMFMLKPLKQSDVVKLLKCQMMN 151
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 16186608 16188254 - MC09g1037 Mch9g1380 698262

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g1380 151 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 146 IPR045279 GO:0009736(InterPro)
Mch9g1380 151 Pfam Response regulator receiver domain 20 145 IPR001789 GO:0000160(InterPro)
Mch9g1380 151 CDD REC_typeA_ARR 20 144 - -
Mch9g1380 151 ProSiteProfiles Response regulatory domain profile. 19 149 IPR001789 GO:0000160(InterPro)
Mch9g1380 151 SMART REC_2 18 145 IPR001789 GO:0000160(InterPro)
Mch9g1380 151 Gene3D - 15 150 - -
Mch9g1380 151 SUPERFAMILY CheY-like 18 146 IPR011006 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g1380 K14492 - - csv:101208898 246.514
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g1781 Mch-Chr4:20749729 Mch9g1380 Mch-Chr9:16186608 2.55E-48 dispersed
Mch9g1380 Mch-Chr9:16186608 Mch9g2202 Mch-Chr9:22574997 4.62E-47 dispersed
Mch9g1380 Mch-Chr9:16186608 Mch6g0185 Mch-Chr6:1237275 1.12E-47 transposed
Mch9g1380 Mch-Chr9:16186608 Mch1g0440 Mch-Chr1:8680262 1.88E-46 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch8g0075 . 52 255 Response Regulator Gene Family AT3G16857 53.1 1.6e-54 211.1
Mch7g1214 . 25 284 Response Regulator Gene Family AT4G31920 55.0 1.7e-71 267.3
Mch5g0747 . 16 293 Response Regulator Gene Family AT4G31920 51.6 1.6e-69 260.8
Mch8g0075 . 11 258 Response Regulator Gene Family AT4G31920 51.8 3.7e-63 239.6
Mch5g0747 . 99 262 Response Regulator Gene Family AT1G67710 54.7 8.0e-40 161.8
Mch11g0515 . 93 256 Response Regulator Gene Family AT1G67710 54.1 8.0e-40 161.8
Mch7g1214 . 108 271 Response Regulator Gene Family AT1G67710 52.4 3.4e-38 156.4
Mch8g3032 . 17 352 Response Regulator Gene Family AT2G25180 55.3 2.2e-85 313.5
Mch6g0639 . 16 372 Response Regulator Gene Family AT2G25180 50.7 1.1e-84 311.2
Mch8g0075 . 11 255 Response Regulator Gene Family AT2G25180 55.1 2.4e-68 256.9
Mch7g1214 . 88 319 Response Regulator Gene Family AT2G01760 50.6 1.2e-53 207.2
Mch8g0075 . 72 258 Response Regulator Gene Family AT2G01760 50.5 1.5e-45 180.3
Mch8g3032 . 79 277 Response Regulator Gene Family AT2G01760 51.9 6.3e-39 158.3
Mch7g1214 . 27 300 Response Regulator Gene Family AT5G58080 51.3 2.3e-69 260.4
Mch8g0075 . 9 257 Response Regulator Gene Family AT5G58080 51.2 4.3e-63 239.6
Mch7g1214 . 26 251 Response Regulator Gene Family AT4G16110 67.5 3.1e-80 296.6
Mch5g0747 . 18 242 Response Regulator Gene Family AT4G16110 67.4 1.5e-79 294.3
Mch11g0515 . 11 234 Response Regulator Gene Family AT4G16110 57.9 1.1e-61 235.0
Mch8g0075 . 11 234 Response Regulator Gene Family AT4G16110 53.8 3.3e-58 223.4
Mch8g3032 . 11 263 Response Regulator Gene Family AT4G16110 51.7 5.3e-56 216.1
Mch6g0639 . 17 237 Response Regulator Gene Family AT4G16110 52.7 2.5e-50 197.2
Mch9g2202 . 12 164 Response Regulator Gene Family AT3G48100 65.8 1.4e-51 199.5
Mch6g0185 . 2 146 Response Regulator Gene Family AT3G48100 72.1 7.1e-51 197.2
Mch4g1566 . 11 147 Response Regulator Gene Family AT3G48100 59.9 5.6e-40 161.0
Mch1g0440 . 61 208 Response Regulator Gene Family AT3G48100 57.4 9.6e-40 160.2
Mch4g1781 . 1 159 Response Regulator Gene Family AT3G48100 51.9 3.6e-39 158.3
Mch9g2202 . 1 193 Response Regulator Gene Family AT1G59940 60.8 2.8e-55 212.6
Mch6g0185 . 1 131 Response Regulator Gene Family AT1G59940 69.5 9.8e-48 187.6
Mch4g1566 . 5 148 Response Regulator Gene Family AT1G59940 60.4 8.9e-41 164.5
Mch4g1781 . 17 156 Response Regulator Gene Family AT1G59940 58.9 1.9e-38 156.8
Mch1g0440 . 62 206 Response Regulator Gene Family AT1G59940 57.2 2.4e-38 156.4
Mch9g1380 . 17 144 Response Regulator Gene Family AT1G59940 63.3 2.4e-38 156.4
Mch9g2202 . 16 185 Response Regulator Gene Family AT1G10470 66.5 4.5e-53 204.9
Mch6g0185 . 1 138 Response Regulator Gene Family AT1G10470 68.8 4.4e-48 188.3
Mch4g1566 . 5 148 Response Regulator Gene Family AT1G10470 58.3 4.4e-40 161.8
Mch4g1781 . 17 182 Response Regulator Gene Family AT1G10470 51.8 3.7e-39 158.7
Mch1g0440 . 68 206 Response Regulator Gene Family AT1G10470 61.9 1.1e-38 157.1
Mch9g1380 . 5 144 Response Regulator Gene Family AT1G10470 59.3 5.9e-37 151.4
Mch9g2202 . 12 164 Response Regulator Gene Family AT3G48100 65.8 1.4e-51 199.5
Mch6g0185 . 2 146 Response Regulator Gene Family AT3G48100 72.1 7.1e-51 197.2
Mch4g1566 . 11 147 Response Regulator Gene Family AT3G48100 59.9 5.6e-40 161.0
Mch1g0440 . 61 208 Response Regulator Gene Family AT3G48100 57.4 9.6e-40 160.2
Mch4g1781 . 1 159 Response Regulator Gene Family AT3G48100 51.9 3.6e-39 158.3
Mch6g0185 . 2 134 Response Regulator Gene Family AT5G62920 75.2 4.6e-50 194.5
Mch9g2202 . 25 175 Response Regulator Gene Family AT5G62920 68.2 1.0e-49 193.4
Mch4g1566 . 11 147 Response Regulator Gene Family AT5G62920 59.9 7.4e-40 160.6
Mch4g1781 . 1 154 Response Regulator Gene Family AT5G62920 55.5 4.8e-39 157.9
Mch1g0440 . 63 208 Response Regulator Gene Family AT5G62920 58.2 2.4e-38 155.6
Mch6g0185 . 1 139 Response Regulator Gene Family AT1G19050 71.9 5.1e-50 194.5
Mch9g2202 . 15 185 Response Regulator Gene Family AT1G19050 57.6 1.0e-45 180.3
Mch4g1566 . 9 150 Response Regulator Gene Family AT1G19050 53.5 5.9e-38 154.5
Mch1g0440 . 51 208 Response Regulator Gene Family AT1G19050 51.9 1.0e-37 153.7
Mch4g1781 . 17 148 Response Regulator Gene Family AT1G19050 60.9 5.0e-37 151.4
Mch1g0440 . 59 210 Response Regulator Gene Family AT2G41310 73.7 3.1e-56 215.3
Mch4g1566 . 8 147 Response Regulator Gene Family AT2G41310 69.3 1.9e-50 196.1
Mch4g1781 . 10 155 Response Regulator Gene Family AT2G41310 60.1 2.1e-44 176.0
Mch9g2202 . 25 158 Response Regulator Gene Family AT2G41310 60.3 3.9e-43 171.8
Mch6g0185 . 1 131 Response Regulator Gene Family AT2G41310 59.7 2.6e-39 159.1
Mch9g1380 . 19 144 Response Regulator Gene Family AT2G41310 57.3 3.8e-38 155.2
Mch1g0440 . 59 319 Response Regulator Gene Family AT3G57040 51.3 4.0e-59 224.9
Mch4g1566 . 1 147 Response Regulator Gene Family AT3G57040 70.5 3.6e-52 201.8
Mch9g2202 . 25 158 Response Regulator Gene Family AT3G57040 60.8 5.6e-45 177.9
Mch4g1781 . 13 186 Response Regulator Gene Family AT3G57040 55.3 7.4e-45 177.6
Mch6g0185 . 1 131 Response Regulator Gene Family AT3G57040 61.7 1.7e-41 166.4
Mch9g1380 . 17 144 Response Regulator Gene Family AT3G57040 56.3 5.1e-38 154.8
Mch6g0185 . 1 145 Response Regulator Gene Family AT1G74890 71.7 3.9e-50 194.9
Mch9g2202 . 25 223 Response Regulator Gene Family AT1G74890 56.7 3.1e-47 185.3
Mch1g0440 . 63 206 Response Regulator Gene Family AT1G74890 56.9 7.0e-39 157.5
Mch4g1566 . 7 142 Response Regulator Gene Family AT1G74890 57.4 1.2e-38 156.8
Mch9g1380 . 19 144 Response Regulator Gene Family AT1G74890 60.3 3.8e-37 151.8
Mch9g1380 . 19 151 Response Regulator Gene Family AT2G40670 67.9 5.2e-45 177.6
Mch9g2202 . 26 159 Response Regulator Gene Family AT2G40670 55.5 1.9e-39 159.1
Mch6g0185 . 1 131 Response Regulator Gene Family AT2G40670 59.3 1.8e-37 152.5
Mch9g1380 . 19 151 Response Regulator Gene Family AT3G56380 69.4 2.8e-45 178.3
Mch9g2202 . 22 159 Response Regulator Gene Family AT3G56380 53.2 3.6e-40 161.4
Mch1g0440 . 64 208 Response Regulator Gene Family AT3G56380 55.5 6.8e-39 157.1
Mch6g0185 . 1 131 Response Regulator Gene Family AT3G56380 61.2 2.0e-38 155.6
Mch4g1781 . 13 152 Response Regulator Gene Family AT3G56380 57.3 3.4e-38 154.8
Mch4g1566 . 9 150 Response Regulator Gene Family AT3G56380 54.5 8.3e-37 150.2
Mch8g0075 . 52 255 Response Regulator Gene Family AT3G16857 53.1 1.6e-54 211.1
Mch7g1214 . 26 251 Response Regulator Gene Family AT4G16110 67.5 3.1e-80 296.6
Mch5g0747 . 18 242 Response Regulator Gene Family AT4G16110 67.4 1.5e-79 294.3
Mch11g0515 . 11 234 Response Regulator Gene Family AT4G16110 57.9 1.1e-61 235.0
Mch8g0075 . 11 234 Response Regulator Gene Family AT4G16110 53.8 3.3e-58 223.4
Mch8g3032 . 11 263 Response Regulator Gene Family AT4G16110 51.7 5.3e-56 216.1
Mch6g0639 . 17 237 Response Regulator Gene Family AT4G16110 52.7 2.5e-50 197.2
Mch7g1214 . 25 284 Response Regulator Gene Family AT4G31920 55.0 1.7e-71 267.3
Mch5g0747 . 16 293 Response Regulator Gene Family AT4G31920 51.6 1.6e-69 260.8
Mch8g0075 . 11 258 Response Regulator Gene Family AT4G31920 51.8 3.7e-63 239.6
Mch5g0747 . 99 262 Response Regulator Gene Family AT1G67710 54.7 8.0e-40 161.8
Mch11g0515 . 93 256 Response Regulator Gene Family AT1G67710 54.1 8.0e-40 161.8
Mch7g1214 . 108 271 Response Regulator Gene Family AT1G67710 52.4 3.4e-38 156.4
Mch8g3032 . 17 352 Response Regulator Gene Family AT2G25180 55.3 2.2e-85 313.5
Mch6g0639 . 16 372 Response Regulator Gene Family AT2G25180 50.7 1.1e-84 311.2
Mch8g0075 . 11 255 Response Regulator Gene Family AT2G25180 55.1 2.4e-68 256.9
Mch7g1214 . 88 319 Response Regulator Gene Family AT2G01760 50.6 1.2e-53 207.2
Mch8g0075 . 72 258 Response Regulator Gene Family AT2G01760 50.5 1.5e-45 180.3
Mch8g3032 . 79 277 Response Regulator Gene Family AT2G01760 51.9 6.3e-39 158.3
Mch7g1214 . 27 300 Response Regulator Gene Family AT5G58080 51.3 2.3e-69 260.4
Mch8g0075 . 9 257 Response Regulator Gene Family AT5G58080 51.2 4.3e-63 239.6
Mch1g0773 . 68 214 Response Regulator Gene Family AT5G60100 80.3 2.0e-61 233.4
Mch6g1811 . 84 221 Response Regulator Gene Family AT5G60100 61.6 2.0e-45 180.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013335 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 27
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44057 PF00072 Response_reg 1.00E-22 CL0304 Mch TR