Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g1382 ATGCGAGCATTGTTGAAGATGAAATGGCTGCTTGAGTTCTTCGTCTTGTTCGTTTTGGCTCCTCTCTGCGTAAGATGTCTAAACCTACCTCTAAACGACGACGTTTTGGGCCTGATAGTGTTTAAAGCCGCTGTTCAAGATCCGAAGCAGAAGCTCGCGACCTGGGACGAAGAGGACGATAGCCCCTGCAACTGGACCGGCGTCAAATGCAGTCCCAGATCCAACCGCGTCGTCGAGCTCAACCTTGATGGCTTCTCTCTCTCGGGTCGGCTCGGTCGGGGGCTTTTCCAGCTGCAGTTTCTGCAGAAATTGTCGCTCTCGAAAAACAATCTTACTGGAAATATTAGCCCTAATTTCGCTCGAGTCGACAATCTACAGGTGATTGATTTGAGCGGGAATAATTTCTCTGGGACAGTTCCGGAGGATGTTTTTCGTCAATGTGGGTCTTTGAGAGTTCTTTCCTTGGCAAACAACAAATTTTCCGGGAACATTCCTGATAGTTTTAGCTCGTGTACAAGTCTGATTGCAGTTAACTTGTCCTCGAATCAGTTTTCGGGTCCTTTGCCTTCTGGGATTTGGTCTTTTAGCGGGCTTCGATCTTTGGACTTGTCTGATAATGCTGTGGAGGGTGAAATTCCGAAGATAATCGAGAATTTTCATAATCTGCGGACTCTTAACTTGAGGAGGAATAGATTTTCTGGGCAGCTTCCTGATGGTATTGGGAATTGTTTGCTTCTGAGGTCTATTGATCTTAGTGAGAATTCTTTCTCTGGGAATCTTCCTGAAACTATGCAGAAACTTGTTTTGTGTGGTAATCTAATTTTAAGCGGGAATTTGTTCGAAGGAAACGTTCCAGAGTGGATAGGAGAGATGAAGAGCCTGGAGACTCTGGACTTCTCTGGGAACAATTTTTCTGGCCACATTCCAACTACAATGGGGAACCTTCAATATCTAAAAGTACTGAATCTCTCTTCAAATGGCTTTACTGGTAACTTTCCGGGGTCTGTGACGAAATGCCAAAGCCTTTTGGCCGTAGATTACAGTCATAATTCAATCACGGGTACTCTTCAGGCGATTGGAAATTTAGGCCAGCTGCAGTTTCTAAACCTGTCTGGGAATTCTTTTGTTGGTCCCATTCCAGAGACTATTGGAGATCTGAAAGCTTTGAGCATTCTTGATTTGAGTAGAAATAGGCTGAACCAGAGCATTCCCGAGGCAATTGGAGGGGCCATGTCTCTAATGGAGCTGAAGCTGGATGAAAACTTTCTAGGGGGTGGAATTCCTGCTTCAATTGGGAACTGTTCTTCCCTTACAACTTTGTTCATATCACACAATAACTTAACCGGCCCAACACCGATGGCATTAGCAAAACTCTCTTATCTTCAAAATGTTGACTTATCCTTTAATAACCTCAATGGAACCCTTCCAAAGCCATTGTCTAATCTTCCAAACCTTCTTGTGTTCAATATTTCTCACAATAACCTTGAGGGCGAGCTGCCTGGCGGTGGATTCTTTAACACCATTTCCCCTTCATCCGTTGCTGGAAATCCGTCCCTATGTGGGTCTGTGGTTAAGAAGTCTTGCCCTTCTGTCCTTCCGAAACCCATTGTTCTTAATCCCAACTCTACTTCAGATTCCACTTCCAATTCCCTGCCTCCAAGTCTAGGAGGTCACAGAAGAAATAGAAACATCCTCAGCATTTCTGCACTCGTTGCCATTGGTGCAGCTGCCTTCATCATCATTGGTGTAATATCGATCACCATCCTCAACCTTCGCGTTCAGTCGCCCATGTCGTCTTCATCTGCAGCTGCGCTTGCATTATCTATTGGGGACGATTTCAGTCATTCCTCCAGTCCTGATGCGAATTCTGGAAAGCTTGTGGTGTTATCAGGAGAACTCGACTTCAGCACAGGAGCACATGCCCTGCTCAACAAGGATTGTGAGCTCGGGCGTGGAGGATTCGGAGCAGTTTATCATACTGTTCTGCGGGACGGACACTCGGTTGCAATCAAGAAGCTTATAGTTTCAAGCCTTGTCAAGTCTCAAGAGGATTTTGAGAGGGAAGTTAAGAAGTTTGGGAAAGTCAGGCACCAAAATCTCGTGGCACTCGAAGGTTATTATTGGACTCCCTCGCTACAGCTCCTTATATACGAATTTGTCTCCGGAGGTAGCTTGTATAGGCTGCTTCACGAAGCATCGGACGACAATGTCCTATCGTGGAACGAGAGGTTCGACATAATTCTCGGCACAGCGAAAGGCCTGGCTCACTTGCATCAATCAAACACAATCCACTATAACATAAAATCCAGCAACATTCTTATTGATTGCAATGGTCAACCTAAGGTGGGAGATTATGGTCTAGCAAGATTGCTGCCAATGTTAGACCGTTATGTTTTGAGTAGCAAGATCCAGAGCGCACTGGGTTACATGGCGCCAGAGTTTGCTTGCAGGACAGTGAAGATAACTGAAAAATGTGACGTGTATGGCTTTGGAGTCTTGATTTTGGAGGTAGTTACAGGGAAGAGACCCGTAGAATACATGGAAGACGACGTTGCAGTCCTCTGCGACATGGTACGAGCAGCAGTGGAAGAAGGAAGGGCTGAAGAATGCATTGACGGGAAGCTGAGGGGAAATTTCCCTGCTGAAGAGGTCATCCCCGTGTTGAAACTAGGCTTGATCTGCACCTCCCATGTACCATCAAATCGGCCCGACATGAGAGAAATGGTCAAGATATTGGAGATGATCAAATGCCCATCTGAATTACAAGAAGAATTTGGGATAAACTAA 2787 45.64 MRALLKMKWLLEFFVLFVLAPLCVRCLNLPLNDDVLGLIVFKAAVQDPKQKLATWDEEDDSPCNWTGVKCSPRSNRVVELNLDGFSLSGRLGRGLFQLQFLQKLSLSKNNLTGNISPNFARVDNLQVIDLSGNNFSGTVPEDVFRQCGSLRVLSLANNKFSGNIPDSFSSCTSLIAVNLSSNQFSGPLPSGIWSFSGLRSLDLSDNAVEGEIPKIIENFHNLRTLNLRRNRFSGQLPDGIGNCLLLRSIDLSENSFSGNLPETMQKLVLCGNLILSGNLFEGNVPEWIGEMKSLETLDFSGNNFSGHIPTTMGNLQYLKVLNLSSNGFTGNFPGSVTKCQSLLAVDYSHNSITGTLQAIGNLGQLQFLNLSGNSFVGPIPETIGDLKALSILDLSRNRLNQSIPEAIGGAMSLMELKLDENFLGGGIPASIGNCSSLTTLFISHNNLTGPTPMALAKLSYLQNVDLSFNNLNGTLPKPLSNLPNLLVFNISHNNLEGELPGGGFFNTISPSSVAGNPSLCGSVVKKSCPSVLPKPIVLNPNSTSDSTSNSLPPSLGGHRRNRNILSISALVAIGAAAFIIIGVISITILNLRVQSPMSSSSAAALALSIGDDFSHSSSPDANSGKLVVLSGELDFSTGAHALLNKDCELGRGGFGAVYHTVLRDGHSVAIKKLIVSSLVKSQEDFEREVKKFGKVRHQNLVALEGYYWTPSLQLLIYEFVSGGSLYRLLHEASDDNVLSWNERFDIILGTAKGLAHLHQSNTIHYNIKSSNILIDCNGQPKVGDYGLARLLPMLDRYVLSSKIQSALGYMAPEFACRTVKITEKCDVYGFGVLILEVVTGKRPVEYMEDDVAVLCDMVRAAVEEGRAEECIDGKLRGNFPAEEVIPVLKLGLICTSHVPSNRPDMREMVKILEMIKCPSELQEEFGIN 928
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 16207679 16212291 + MC09g1039 Mch9g1382 698264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g1382 928 Pfam Leucine Rich Repeat 101 120 IPR001611 GO:0005515(InterPro)
Mch9g1382 928 Pfam Leucine Rich Repeat 221 243 IPR001611 GO:0005515(InterPro)
Mch9g1382 928 Pfam Leucine Rich Repeat 389 409 IPR001611 GO:0005515(InterPro)
Mch9g1382 928 Pfam Leucine Rich Repeat 198 219 IPR001611 GO:0005515(InterPro)
Mch9g1382 928 Pfam Leucine Rich Repeat 293 315 IPR001611 GO:0005515(InterPro)
Mch9g1382 928 Pfam Leucine Rich Repeat 246 267 IPR001611 GO:0005515(InterPro)
Mch9g1382 928 CDD STKc_IRAK 649 913 - -
Mch9g1382 928 ProSitePatterns Protein kinases ATP-binding region signature. 649 672 IPR017441 GO:0005524(InterPro)
Mch9g1382 928 SUPERFAMILY L domain-like 198 546 - -
Mch9g1382 928 Pfam Leucine rich repeat N-terminal domain 31 71 IPR013210 -
Mch9g1382 928 SUPERFAMILY L domain-like 32 267 - -
Mch9g1382 928 SUPERFAMILY Protein kinase-like (PK-like) 647 913 IPR011009 -
Mch9g1382 928 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 720 921 - -
Mch9g1382 928 Gene3D Transferase(Phosphotransferase) domain 1 720 924 - -
Mch9g1382 928 FunFam Leucine-rich repeat receptor-like protein kinase PXC2 355 531 - -
Mch9g1382 928 Gene3D Phosphorylase Kinase; domain 1 632 719 - -
Mch9g1382 928 Gene3D Ribonuclease Inhibitor 196 271 IPR032675 -
Mch9g1382 928 Gene3D Ribonuclease Inhibitor 32 191 IPR032675 -
Mch9g1382 928 ProSiteProfiles Protein kinase domain profile. 643 915 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch9g1382 928 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 32 310 - -
Mch9g1382 928 Gene3D Ribonuclease Inhibitor 272 531 IPR032675 -
Mch9g1382 928 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 637 719 - -
Mch9g1382 928 Pfam Leucine rich repeat 317 374 IPR001611 GO:0005515(InterPro)
Mch9g1382 928 Pfam Leucine rich repeat 124 184 IPR001611 GO:0005515(InterPro)
Mch9g1382 928 Pfam Leucine rich repeat 412 471 IPR001611 GO:0005515(InterPro)
Mch9g1382 928 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 272 913 IPR051716 -
Mch9g1382 928 Pfam Protein tyrosine and serine/threonine kinase 645 911 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch9g1382 928 SMART LRR_typ_2 291 315 IPR003591 -
Mch9g1382 928 SMART LRR_typ_2 98 121 IPR003591 -
Mch9g1382 928 SMART LRR_typ_2 386 410 IPR003591 -
Mch9g1382 928 SMART LRR_typ_2 122 146 IPR003591 -
Mch9g1382 928 SMART LRR_typ_2 482 506 IPR003591 -
Mch9g1382 928 SMART LRR_typ_2 219 243 IPR003591 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g2010 Mch-Chr5:19743626 Mch9g1382 Mch-Chr9:16207679 1.83E-189 dispersed
Mch9g1382 Mch-Chr9:16207679 Mch5g0414 Mch-Chr5:2808800 4.06E-53 dispersed
Mch4g2458 Mch-Chr4:25472963 Mch9g1382 Mch-Chr9:16207679 1.16E-221 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77698 PF07714 PK_Tyr_Ser-Thr 8.80E-41 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g1382 - - - 0.0