Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g1383 ATGTCCTCCGAAGACATGAATGGGCTCAGCTCCCAGCTCGTCTTCTCCGACGAAGCCATGCCCTTCAATTGCGCCAACACGCCGCAGCGCCGAGTCGGCGACCCGGGTCCCAAAACCCGCGAGCTCTGCGGTTTCATGGACGACAAGCTCTTCCCTGTGGACCGCGACCGGTTCTTCGCGCACCAGGGCGCGGATTTCCGCCGTAGTGTGTTCAGTGACAGCCGGAATTGGAATGGGAATGGGAGTGCGAGAAGTGGGAGTGGGAAAGGATCGGAGGAGGAAGACGATGATGATGATGATGATGATGAAGAAAATGAGGTTGATGATGGTGATGATGATGTTGAGGGACTCGTATCTATGGATGATGTCAATAAGTGCAATAAAATGGCCAACCCCAACAGCAGCAACAGTGATAGAAACGATCAGAGTAGTGGCGGCTTAAAAAATGGGACGAACAAATTGGGAAATGGGAAGCCTAAGCACCATTCTTCTTTTGGTGGAACCCTGTTGGTCAAGGATGGAATGGTTGGCCCTTCAGCCAGTAACGCAGGAGCAACGCAGAGTGAGAATCATCCTCAGGCAAGGTTGGGGAATTACCCTAATGCGGTTACAATTGCAGAACCTGATGGTGATGCTTATTATTCCCAATATTTGCAAGGCACTGAGGGGTCTGCTTCTGGCCAGAAGGATTTGGGTATGGAAAATGGATGTGGGTTTAATGGGAGAAGGGATGCTTCAATTTCGAGCGAGCCCGGAGAGTCTCTGAGAACAATTCTCGCAGACCCTGTGACGGGTGCTCTTATGGATGATGCAATGATATTACCGTGTGGGCATTCCTTTGGTAGTGGTGGAATACAACATGTTCTTAGAGTAAAATCTTGTTACTCGTGTTCTCAGTCGGTTTCTGAAGACTCTATTGCTCAGAACTTATCTCTTCAAGCTGCAGTGCAAGCATTCCGCAGGGAAGAAGAAATACTGTTTTACCGCTCACCAAAAAGGAGAAGGGAGAGGTTTGAGCAGGACAAGGGTGGTTATGGTGATTTGACTCTCATGGATACTCCAAGGGGTCGAGGTGTTCAGTTTCCTTTTGTCGTGACAGATCGGGTAATTATCAAGGGGAACAAGAGGACACCACAGCGTTTTGTGGGACGTGAGGCTGTTGTTACAACACAGTGCTTGAATGGATGGTATGTGGTGAAAACACTAGACAATGCAGAGAGTGTAAAGTTGCAGTACCGCTCGCTTGCAAAGGTTCCAAACGATGCAGCATCAAAACCGATACCAAGGAAGATCGCGCCGAATTGGCTCTAG 1311 49.35 MSSEDMNGLSSQLVFSDEAMPFNCANTPQRRVGDPGPKTRELCGFMDDKLFPVDRDRFFAHQGADFRRSVFSDSRNWNGNGSARSGSGKGSEEEDDDDDDDDEENEVDDGDDDVEGLVSMDDVNKCNKMANPNSSNSDRNDQSSGGLKNGTNKLGNGKPKHHSSFGGTLLVKDGMVGPSASNAGATQSENHPQARLGNYPNAVTIAEPDGDAYYSQYLQGTEGSASGQKDLGMENGCGFNGRRDASISSEPGESLRTILADPVTGALMDDAMILPCGHSFGSGGIQHVLRVKSCYSCSQSVSEDSIAQNLSLQAAVQAFRREEEILFYRSPKRRRERFEQDKGGYGDLTLMDTPRGRGVQFPFVVTDRVIIKGNKRTPQRFVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVPNDAASKPIPRKIAPNWL 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 16217605 16221913 + MC09g1040 Mch9g1383 698265

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g1383 436 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 8 424 - -
Mch9g1383 436 MobiDBLite consensus disorder prediction 69 196 - -
Mch9g1383 436 MobiDBLite consensus disorder prediction 126 151 - -
Mch9g1383 436 MobiDBLite consensus disorder prediction 180 196 - -
Mch9g1383 436 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 254 325 IPR013083 -
Mch9g1383 436 SUPERFAMILY RING/U-box 254 327 - -
Mch9g1383 436 ProSiteProfiles U-box domain profile. 254 326 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch9g1383 436 MobiDBLite consensus disorder prediction 69 87 - -
Mch9g1383 436 MobiDBLite consensus disorder prediction 92 117 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g1383 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch9g1196 Mch-Chr9:12983949 Mch9g1383 Mch-Chr9:16217605 4.14E-34 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch8g3226 . 2 748 Plant U-box Gene Family AT5G57035 54.1 5.1e-231 797.7
Mch8g0371 . 227 523 Plant U-box Gene Family AT5G57035 54.9 1.1e-89 328.2
Mch9g1383 . 202 437 Plant U-box Gene Family AT5G05230 59.2 2.4e-71 266.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004883 1 1 1 1 1 1 2 1 1 2 1 1 2 2 2 0 1 2 1 1 2 1 1 1 1 1 1 2 4 1 40