Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g1387 ATGGCTTCTTCTCTTCTTCTTTCTCTCTTCCTCCTCCACCTCTACTTTGGCTCCACTGCCGCCGACTACGGCGGCTGGCAGAGCGGCCATGCCACCTTCTACGGCGGTGGCGATGCATCTGGCACTATGGGTGGAGCTTGTGGGTACGGAAACTTGTATAGCCAAGGGTACGGGACGAACACGGTGGCGCTGAGCACGGCGCTGTTCAACAACGGCCTGAGCTGCGGCGCCTGCTACGAGATGACATGCACCAACGACCCCAAGTGGTGCCTCCCCGGCACCATCACCGTCACCGCCACCAACTTCTGCCCCCCCAACTTCGCCCTCCCCAACAACAACGGCGGCTGGTGCAACCCCCCGCTCCAGCACTTCGACATGGCTGAGCCTGCCTTCCTCCAGATCGCCCAGTACCGCGCCGGAATCGTCCCCGTCTCCTTCCGAAGGGTGCCCTGCATGAAGAAAGGGGGAGTACGGTTCACAATCAACGGCCACTCGTACTTCAACCTAGTCTTGATAACGAACGTCGGCGGCGCGGGGGACGTGCACGCGGTGTCGATAAAGGGGTCACGCACCGGGTGGCAAGCGATGTCGCGAAACTGGGGCCAGAACTGGCAGAGCAACAACTACTTGAACGGGCAGGCGCTGTCCTTTCAAGTCACCCTCAGCGACGGCCGCACACTCACAGCCTACAACGCCGCACCCTCCAACTGGCAGTTTGGCCAGACCTTTGAGGCCGCCCAGTTCTAG 747 61.58 MASSLLLSLFLLHLYFGSTAADYGGWQSGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTVALSTALFNNGLSCGACYEMTCTNDPKWCLPGTITVTATNFCPPNFALPNNNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPVSFRRVPCMKKGGVRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQAMSRNWGQNWQSNNYLNGQALSFQVTLSDGRTLTAYNAAPSNWQFGQTFEAAQF 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 16250690 16255119 + MC09g1044 Mch9g1387 698269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g1387 248 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576(InterPro)
Mch9g1387 248 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576(InterPro)
Mch9g1387 248 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576(InterPro)
Mch9g1387 248 PRINTS Expansin/Lol pI family signature 139 155 IPR007118 GO:0005576(InterPro)
Mch9g1387 248 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576(InterPro)
Mch9g1387 248 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576(InterPro)
Mch9g1387 248 Pfam Expansin C-terminal domain 157 234 IPR007117 -
Mch9g1387 248 SMART dpbb_1 61 146 IPR007112 -
Mch9g1387 248 Pfam Lytic transglycolase 61 146 IPR009009 -
Mch9g1387 248 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 156 IPR007112 -
Mch9g1387 248 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 245 IPR007117 -
Mch9g1387 248 FunFam Expansin 17 152 - -
Mch9g1387 248 Gene3D - 15 152 IPR036908 -
Mch9g1387 248 CDD DPBB_EXPA_N 25 151 - -
Mch9g1387 248 PRINTS Expansin signature 114 131 IPR002963 GO:0009664(InterPro)
Mch9g1387 248 PRINTS Expansin signature 202 223 IPR002963 GO:0009664(InterPro)
Mch9g1387 248 PRINTS Expansin signature 231 247 IPR002963 GO:0009664(InterPro)
Mch9g1387 248 PRINTS Expansin signature 167 188 IPR002963 GO:0009664(InterPro)
Mch9g1387 248 PRINTS Expansin signature 131 144 IPR002963 GO:0009664(InterPro)
Mch9g1387 248 PRINTS Expansin signature 155 167 IPR002963 GO:0009664(InterPro)
Mch9g1387 248 PRINTS Expansin signature 83 94 IPR002963 GO:0009664(InterPro)
Mch9g1387 248 PRINTS Expansin signature 95 105 IPR002963 GO:0009664(InterPro)
Mch9g1387 248 PRINTS Expansin signature 56 70 IPR002963 GO:0009664(InterPro)
Mch9g1387 248 SUPERFAMILY Barwin-like endoglucanases 9 174 IPR036908 -
Mch9g1387 248 SUPERFAMILY PHL pollen allergen 153 244 IPR036749 -
Mch9g1387 248 PANTHER EXPANSIN-A15 15 248 IPR002963 GO:0009664(InterPro)
Mch9g1387 248 Gene3D - 156 248 IPR036749 -
Mch9g1387 248 FunFam Expansin 156 248 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g1664 Mch-Chr4:19820837 Mch9g1387 Mch-Chr9:16250690 2.09E-92 dispersed
Mch4g2319 Mch-Chr4:24548151 Mch9g1387 Mch-Chr9:16250690 1.15E-132 dispersed
Mch8g0869 Mch-Chr8:6201602 Mch9g1387 Mch-Chr9:16250690 8.65E-68 dispersed
Mch9g1387 Mch-Chr9:16250690 Mch9g2116 Mch-Chr9:22063783 6.77E-147 dispersed
Mch4g0379 Mch-Chr4:2416874 Mch9g1387 Mch-Chr9:16250690 2.66E-93 transposed
Mch4g2463 Mch-Chr4:25504783 Mch9g1387 Mch-Chr9:16250690 6.63E-155 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g1387 - - - 0.0