Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g1398 AGAGAGAGATTCGACGAGATAGCGAAGAAGATAAAGAGAGAGACAGATGTATCATCGTCATCAAATAATCTTCCACACCAAATTATGGGAAGAAGACAGACGACGCTACAGTCTCCTCCTGGGACTCTCAACACCATTACGCCATGCGCGGCCTGCAAGCTTTTGAGAAGAAGGTGTGTCCAAGAATGCCCCTTCTCCCCATACTTCTCCCCCCACGAACCTCACAAGTTTGCCTCCGTGCACAAGGTCTTCGGTGCCAGCAACGTCTCCAAGATGCTCATGGAAGTTGCAGAGAATCAAAGAGCAGATGCTGCAAATAGCCTTGTCTATGAAGCGAATGTGAGGCTGAGAGATCCTGTGTATGGCTGCATGGGCGCCATTTCAGCTCTACAACACCAAATCCAAGCATTACAAGTTGAACTCAATGCAGTTAGAGCTGAGATTTTAAGATACAAATATAGAGAAGCTAATATCATTCACTCTTCTCCTCAACATGTGCCTTTTCTTTCGTCTTCGGCTGAGGTCGTTTCGATCGCCGTGCCACCACCACCTCCACTGTTGCCTCCACCGCCTCATTATGACGGTTCAGCTTCTTCCTCCTCTTCATTGTACAACCGGCCCGCCGTGGCGGTGGCGGCTGATTATAGTACTATTTCAAGTGATGAAAATGTTCCCTACTTTGTTAGGACTTCTACTACTCATCAATTGGATTCTTAG 717 47.42 RERFDEIAKKIKRETDVSSSSNNLPHQIMGRRQTTLQSPPGTLNTITPCAACKLLRRRCVQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVAENQRADAANSLVYEANVRLRDPVYGCMGAISALQHQIQALQVELNAVRAEILRYKYREANIIHSSPQHVPFLSSSAEVVSIAVPPPPPLLPPPPHYDGSASSSSSLYNRPAVAVAADYSTISSDENVPYFVRTSTTHQLDS 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 16416749 16418515 - MC09g1052 Mch9g1398 698280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g1398 238 MobiDBLite consensus disorder prediction 1 29 - -
Mch9g1398 238 ProSiteProfiles LOB domain profile. 47 148 IPR004883 -
Mch9g1398 238 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 46 170 - -
Mch9g1398 238 Pfam Lateral organ boundaries (LOB) domain 48 145 IPR004883 -
Mch9g1398 238 Coils Coil 127 147 - -
Mch9g1398 238 MobiDBLite consensus disorder prediction 1 16 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g0126 Mch-Chr6:743224 Mch9g1398 Mch-Chr9:16416749 8.35E-45 dispersed
Mch8g2579 Mch-Chr8:28931017 Mch9g1398 Mch-Chr9:16416749 4.83E-43 dispersed
Mch9g1398 Mch-Chr9:16416749 Mch9g1433 Mch-Chr9:16724604 4.86E-44 dispersed
Mch4g2472 Mch-Chr4:25556187 Mch9g1398 Mch-Chr9:16416749 4.59E-78 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44059 PF03195 LOB 4.70E-40 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g1398 - - - 0.0