Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g1420 ATGGATGAAAATGAAACCCCATTAGATTCCAACTCCTGTTGGAAGCTCCCACTGCCAGATTTTGGGGTTTTGTTGAAGGGGCTCTGTCTTTCAGGCCAGAAGAGCAAAACCCATGTCTCTGTTTTGTGGTTTTTGGTGATTTTGGTGTCCATTGGAGCAGTTTTGGGCCAGGATTGGGATGGCGTGGTTGTCACACAGGCTGATTTCCAATCTCTTGAGGCGTTTAAGCAGGAACTTGATGATCCAAAAGGGTTCCTGAAGAGCTGGAACGACAGTGGATTTGGGGCTTGTTCTGGTGGATGGGCTGGGATCAAGTGTGCTAAGGGACAGGTTATTGTGATACAGCTTCCATGGAAGGGGTTGGGAGGAAGAATCACTGACAAAATTGGGCAGCTTCAGGCCCTTAGAAAACTCAGCTTACATGACAACTTCATTGGTGGATCAATCCCTTCCTCATTGGGGCTTCTCCCAAATCTCAGAGGGGTTCAGTTGTTCAACAATCGGCTTTCGGGGTCGGTCCCGGCGTCGTTGGGGCTTTGTCCTTTGCTTCAAACTCTTCACATTAGTAACAATTTGCTCACCGGAACAATCCCTCCTAGTTTGGCTAACTCCACCAAGCTCTATTGGCTTAACTTGAGCTTCAACTCGCTTTCGGGTCCGATCCCACCAAGTCTCGCCCGATCGGTGTCCCTTACTTTCCTTGCTCTTCAACACAACAATCTCTCTGGCAGCATTCCGGACTCTTGGGGCGGCGGCGCCACCGAGCAAAACCGGGTGTTTCAGCTCAAGTCTCTGGCTCTTGATGGCAACCTCCTCTCAGGTACCATACCAACTTCTTTAAGCAAGTTGAGTGAGCTTCAAGTGGTTTCCCTTAGCCACAATAGGTTGAATGGTGGCATTCCAGAAGAAATTAGTAGGCTTTCTCTGCTCAGAACTTTGGATGTTTCTAACAATTTTCTTAATGGGAGTATCCCCCAAAGTTTTGATAGATTGAGGAATCTCTCTGTTCTAAATTTGAGTAGAAACAGATTCAATGGTGAAATTCCTGAAACTTTGGGGAACATTTCAACACTTACACAACTTGATTTATCTCAGAACAATCTAAGTGGAGAAATACCAGCTTCTCTTGCTGACTTGAAAGGTCTTCAATCCTTAAATGTCTCCTACAATAATCTATCGGGTTCGGTTCCTTCGGCGCTCTCTGAAAAATTCGATGCAAGTTCCTTTGTTGGGAATATTCAGCTCTGTGGGTTCAGTGGTTCGACTCCGTGCCCAGCCCCGGCCCCTTCTCAAGAAGTTCCTGCTCCTCCACCGGAAGGTTCGACATCCCGTCATCGGAAGTTGAGTACTAAAGATATAATACTCATAGCAGCAGGAGCCCTCCTTCTAGTCTTGATTATAGTTTTCTTTGTACTGCTCTGCTGCTTGATAAGAAAAAGGGCTGCTTCAAAAGGGAAGGATGGTGATGAGGCTGCAGCAGCAGCCGGGGCTGCAAGGGCCGAGAAGGGTGTTCCTCCGACTAGCAGTGAAGTCGAAGCAGCGGGAGGAGATGCTGGAGGGAAGCTCGTGCATTTCGACGGGCAAACGGTCTTCACAGCAGATGATCTTCTGTGTGCAACAGCAGAGATTATGGGGAAAAGTACTTATGGGACAGTCTATAAGGCCACATTGGAGGATGGAAATCAAGTTGCAGTGAAGAGATTGCGAGAGAAGATCACAAAAAGCCAGAAGGAATTTGAAGCAGAGGTCAACATACTTGGCAAAATCAGGCATCCAAATCTTCTAGCTTTGAGAGCTTATTACTTGGGACCCAAAGGAGAAAAGCTTCTCGTTTTCGATTACATGTCGAACGGGAGTCTCGCAGCGTTCCTCCATGCTCGGGGACCAGACACGTCCATCGACTGGCCAACGAGGATGAAGATCGCTCAGGGTATGACCCGTGGCCTCTATCATCTTCACGCACACGAGAACAGCATCCATGGAAACCTAACATCCAGCAACATTCTACTTGATGAGCATATAAATGCTAAGATTGCAGACTTTGGCCTATCAAGGTTGATGACTGCTGCTGCAAGCTCGAATGTGATCGCAACTGCAGGGGCACTCGGGTACCGAGCGCCAGAGCTCTCGAAGCTGAAGAAAGCCAACACGAAAACGGACATATACAGCCTTGGAGTGATCATATTGGAACTCCTGACTGGGAAGTCTCCCGGTGAAGCCATGAACGGAGTCGACTTGCCGCAATGGGTTGCATCAATCGTCAAAGAGGAGTGGACCAATGAAGTCTTCGATTTGGAGTTGATGAGGGACGCATCTACCATTGGAGACGAGTTGCTGAACACTCTGAAACTTGCTTTGCATTGCGTCGATCCTTCGCCATCGGCGAGACCGGAAGTTCAACAAGTGCTGCAGCAACTGGAGGAGATTAGGCCAGAGACTGCCGCTGCCAGTTCTGGAGATGATGGAGTAGGAGGAGGAGCCCCTTCAACAAGTGAATGA 2499 48.46 MDENETPLDSNSCWKLPLPDFGVLLKGLCLSGQKSKTHVSVLWFLVILVSIGAVLGQDWDGVVVTQADFQSLEAFKQELDDPKGFLKSWNDSGFGACSGGWAGIKCAKGQVIVIQLPWKGLGGRITDKIGQLQALRKLSLHDNFIGGSIPSSLGLLPNLRGVQLFNNRLSGSVPASLGLCPLLQTLHISNNLLTGTIPPSLANSTKLYWLNLSFNSLSGPIPPSLARSVSLTFLALQHNNLSGSIPDSWGGGATEQNRVFQLKSLALDGNLLSGTIPTSLSKLSELQVVSLSHNRLNGGIPEEISRLSLLRTLDVSNNFLNGSIPQSFDRLRNLSVLNLSRNRFNGEIPETLGNISTLTQLDLSQNNLSGEIPASLADLKGLQSLNVSYNNLSGSVPSALSEKFDASSFVGNIQLCGFSGSTPCPAPAPSQEVPAPPPEGSTSRHRKLSTKDIILIAAGALLLVLIIVFFVLLCCLIRKRAASKGKDGDEAAAAAGAARAEKGVPPTSSEVEAAGGDAGGKLVHFDGQTVFTADDLLCATAEIMGKSTYGTVYKATLEDGNQVAVKRLREKITKSQKEFEAEVNILGKIRHPNLLALRAYYLGPKGEKLLVFDYMSNGSLAAFLHARGPDTSIDWPTRMKIAQGMTRGLYHLHAHENSIHGNLTSSNILLDEHINAKIADFGLSRLMTAAASSNVIATAGALGYRAPELSKLKKANTKTDIYSLGVIILELLTGKSPGEAMNGVDLPQWVASIVKEEWTNEVFDLELMRDASTIGDELLNTLKLALHCVDPSPSARPEVQQVLQQLEEIRPETAAASSGDDGVGGGAPSTSE 832
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 16572272 16576802 + MC09g1072 Mch9g1420 698302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g1420 832 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 55 826 IPR052451 -
Mch9g1420 832 Pfam Leucine Rich Repeat 183 203 IPR001611 GO:0005515(InterPro)
Mch9g1420 832 Pfam Leucine Rich Repeat 230 250 IPR001611 GO:0005515(InterPro)
Mch9g1420 832 Pfam Leucine Rich Repeat 135 154 IPR001611 GO:0005515(InterPro)
Mch9g1420 832 Pfam Leucine Rich Repeat 207 226 IPR001611 GO:0005515(InterPro)
Mch9g1420 832 Gene3D Ribonuclease Inhibitor 260 427 IPR032675 -
Mch9g1420 832 Pfam Protein tyrosine and serine/threonine kinase 541 806 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch9g1420 832 ProSiteProfiles Protein kinase domain profile. 538 809 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch9g1420 832 SMART LRR_typ_2 283 307 IPR003591 -
Mch9g1420 832 SMART LRR_typ_2 132 156 IPR003591 -
Mch9g1420 832 SMART LRR_typ_2 379 403 IPR003591 -
Mch9g1420 832 SMART LRR_typ_2 331 355 IPR003591 -
Mch9g1420 832 MobiDBLite consensus disorder prediction 426 445 - -
Mch9g1420 832 Pfam Leucine rich repeat N-terminal domain 67 106 IPR013210 -
Mch9g1420 832 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 250 427 - -
Mch9g1420 832 CDD STKc_IRAK 544 809 - -
Mch9g1420 832 SUPERFAMILY RNI-like 115 401 - -
Mch9g1420 832 FunFam Leucine-rich repeat receptor-like protein kinase 523 614 - -
Mch9g1420 832 FunFam Pollen receptor-like kinase 1 615 820 - -
Mch9g1420 832 SUPERFAMILY Protein kinase-like (PK-like) 542 810 IPR011009 -
Mch9g1420 832 Gene3D Transferase(Phosphotransferase) domain 1 616 821 - -
Mch9g1420 832 Gene3D Ribonuclease Inhibitor 67 181 IPR032675 -
Mch9g1420 832 Gene3D Ribonuclease Inhibitor 182 257 IPR032675 -
Mch9g1420 832 MobiDBLite consensus disorder prediction 810 832 - -
Mch9g1420 832 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 65 247 - -
Mch9g1420 832 Pfam Leucine rich repeat 332 392 IPR001611 GO:0005515(InterPro)
Mch9g1420 832 Pfam Leucine rich repeat 261 318 IPR001611 GO:0005515(InterPro)
Mch9g1420 832 Gene3D Phosphorylase Kinase; domain 1 544 615 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g0931 Mch-Chr3:13201033 Mch9g1420 Mch-Chr9:16572272 2.02E-58 dispersed
Mch6g1070 Mch-Chr6:7687393 Mch9g1420 Mch-Chr9:16572272 5.06E-51 dispersed
Mch9g1420 Mch-Chr9:16572272 Mch9g1940 Mch-Chr9:20871966 4.42E-77 dispersed
Mch5g1974 Mch-Chr5:19536445 Mch9g1420 Mch-Chr9:16572272 3.32E-185 transposed
Mch9g0064 Mch-Chr9:507326 Mch9g1420 Mch-Chr9:16572272 3.82E-54 transposed
Mch4g2458 Mch-Chr4:25472963 Mch9g1420 Mch-Chr9:16572272 7.29E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77699 PF07714 PK_Tyr_Ser-Thr 5.40E-41 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g1420 - - - 0.0