Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch9g1433 | ATGGGCGGAAACTCGCCGTGCGCCTCCTGCAAGCTGCTCCGGCGGCGGTGCGCCAAAGACTGCATTTTTGCCCCTTATTTTCCCTCCGATGACCCCCACAAGTTTGCTATTGTTCATAAAGTCTTTGGTGCCAGCAATGTCAGCAAAATGCTGCAGGAACTGCCGGTTTCACAAAGAGGCGACGCCGTGATGAGCCTAGTTTACGAGGCAAGTGCAAGAGTGAGGGACCCAGTGTACGGATGCGTAGGGGCAATTTCGTACTTGCAGAACCAAGTCTCACAGCTACAGATGCAGCTGGCGGTGGCGCAAGCCGAGATTCTGTGCATCCAAATGCAGCAAGACCACCCCGTTTTCCCAAATTGCCCCCAGATCCACTACTCCGGCGACAAGCTACTCCCGCCGCCGTCTCAGTGCCTCAATTTTGCCAACTCTCCTAATGTAATTTACGACACCGTTTTTGGACATGATATAGTTTCTTGA | 480 | 53.12 | MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVSQRGDAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPNCPQIHYSGDKLLPPPSQCLNFANSPNVIYDTVFGHDIVS | 159 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 16724604 | 16725996 | + | MC09g1084 | Mch9g1433 | 698315 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch9g1433 | 159 | Coils | Coil | 85 | 105 | - | - | |
| Mch9g1433 | 159 | ProSiteProfiles | LOB domain profile. | 5 | 106 | IPR004883 | - | |
| Mch9g1433 | 159 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 4 | 114 | - | - | |
| Mch9g1433 | 159 | Pfam | Lateral organ boundaries (LOB) domain | 6 | 103 | IPR004883 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch2g0739 | Mch-Chr2:5062145 | Mch9g1433 | Mch-Chr9:16724604 | 1.95E-56 | dispersed | |
| Mch3g0858 | Mch-Chr3:12548946 | Mch9g1433 | Mch-Chr9:16724604 | 7.79E-57 | dispersed | |
| Mch4g0045 | Mch-Chr4:317030 | Mch9g1433 | Mch-Chr9:16724604 | 4.19E-52 | dispersed | |
| Mch9g0250 | Mch-Chr9:1869935 | Mch9g1433 | Mch-Chr9:16724604 | 8.01E-22 | dispersed | |
| Mch9g1398 | Mch-Chr9:16416749 | Mch9g1433 | Mch-Chr9:16724604 | 4.86E-44 | dispersed | |
| Mch9g1433 | Mch-Chr9:16724604 | Mch9g1638 | Mch-Chr9:18513217 | 9.07E-39 | dispersed | |
| Mch2g0380 | Mch-Chr2:2802266 | Mch9g1433 | Mch-Chr9:16724604 | 5.01E-41 | transposed | |
| Mch3g0514 | Mch-Chr3:9169524 | Mch9g1433 | Mch-Chr9:16724604 | 5.17E-48 | transposed | |
| Mch2g0815 | Mch-Chr2:5603779 | Mch9g1433 | Mch-Chr9:16724604 | 6.03E-59 | wgd | |
| Mch4g2472 | Mch-Chr4:25556187 | Mch9g1433 | Mch-Chr9:16724604 | 3.51E-44 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 44061 | PF03195 | LOB | 4.40E-42 | No_clan | Mch | TF |
Pathway information