Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g1452 ATGTGCGAAGTCGCAGTGCCGAAGACTCCATTGTTTTCGTCGCCAGAGATGGTTTCACTGCTATACAATAAGTCATCGCTCAACTGTTCTCGTTCTTCTTCTTCTCCTAGATCGGTGTCGAGCCCGAGGAAGATTCATGTTTCTCCGTCGTCTCCGCCGCCGCCGTGTCAGCCATCTGTGTTGCCGTTGGCTGTTGATACGGTTCTGAAGAGGAAGAGGCCGGCAAGGATTGCCGTGCCGGTGATTTCGTCCGCGGCCGTTAGTTTTGGATTTGGATTTGAGTCGGAGAAAGTCGAGGCGATGGAGGAGGAAGGGGAGGGATATTCGGTTTATTGCAAGAGAGGAAGGAGACGCAGCGCTATGGAGGATCGATTCTCGGCCAGCGTTGGAATTCGTGGAGATTCTCGACAGGCTTTCTTCGGAGTTTTCGACGGGCACGGCGGAGCAAAAGTGGCAGAAATCGCCGCGAAAAGAATGAGCAAGAACGTGATCGATGAAGTAGCGAGAAGAACAGAATCGGAACTCGAGGAAGCAATCAAGGACGGCTATTCGACGACCGATCGAGAAGTATCAGAGGAAGGCGTCAGCGGCGGCGCCTGCTGCGTCGCCGCATTGATCCGGAACGGAAATCTCGCAGTCTCCAACGTAGGCGATTGTCGCGCCGTGTTGAGCAGAAGGGGAAAAGCAGAAGCCCTAACGTCCGATCACCGCCCGTCCAGAGAAGACGAGAGAAATCGGATCGAAAATTCGGGTGGTTATGTAGATTGTTGCCGTGGAGCGTGGAGAGTTCAAGGAACACTAGCAGTGTCGCGAGCGATCGGAGATGGACATTTGAAACAGTGGGTGATATCGGAGCCGGAAACGAGAGTGGTGAAGATTGAGGATGATTGCGATTTCTTGATTCTTGCTTCTGATGGTCTTTGGGACAAGGTTACGAATCAGGAAGCGGTAGATATAGTGCAGCCGCTGTGCGTAGGGGCGGAGAAGCCGAAACTATTCTCGGCGTGTAAAGAACTCGCCGCCTTGTCCACATCGAGAGGCTCAATCGACGATACGAGCGTCATGATCATCAAATTACCATCCTTTATC 1089 52.8 MCEVAVPKTPLFSSPEMVSLLYNKSSLNCSRSSSSPRSVSSPRKIHVSPSSPPPPCQPSVLPLAVDTVLKRKRPARIAVPVISSAAVSFGFGFESEKVEAMEEEGEGYSVYCKRGRRRSAMEDRFSASVGIRGDSRQAFFGVFDGHGGAKVAEIAAKRMSKNVIDEVARRTESELEEAIKDGYSTTDREVSEEGVSGGACCVAALIRNGNLAVSNVGDCRAVLSRRGKAEALTSDHRPSREDERNRIENSGGYVDCCRGAWRVQGTLAVSRAIGDGHLKQWVISEPETRVVKIEDDCDFLILASDGLWDKVTNQEAVDIVQPLCVGAEKPKLFSACKELAALSTSRGSIDDTSVMIIKLPSFI 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 16876043 16877464 - MC09g1101 Mch9g1452 698334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g1452 363 SUPERFAMILY PP2C-like 107 360 IPR036457 -
Mch9g1452 363 Pfam Protein phosphatase 2C 112 351 IPR001932 -
Mch9g1452 363 MobiDBLite consensus disorder prediction 27 46 - -
Mch9g1452 363 MobiDBLite consensus disorder prediction 27 57 - -
Mch9g1452 363 CDD PP2Cc 107 359 IPR001932 -
Mch9g1452 363 ProSitePatterns PPM-type phosphatase domain signature. 139 147 IPR000222 GO:0043169(InterPro)
Mch9g1452 363 ProSiteProfiles PPM-type phosphatase domain profile. 107 359 IPR001932 -
Mch9g1452 363 Gene3D - 108 362 IPR036457 -
Mch9g1452 363 SMART PP2C_4 98 357 IPR001932 -
Mch9g1452 363 SMART PP2C_SIG_2 126 359 IPR001932 -
Mch9g1452 363 PANTHER PROTEIN PHOSPHATASE 99 357 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Mch9g1452 363 FunFam probable protein phosphatase 2C 25 100 362 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g0090 Mch-Chr3:1069196 Mch9g1452 Mch-Chr9:16876043 1.60E-122 dispersed
Mch4g1826 Mch-Chr4:21120484 Mch9g1452 Mch-Chr9:16876043 1.03E-47 dispersed
Mch4g2679 Mch-Chr4:26751110 Mch9g1452 Mch-Chr9:16876043 1.37E-86 dispersed
Mch8g0055 Mch-Chr8:319282 Mch9g1452 Mch-Chr9:16876043 6.57E-69 dispersed
Mch8g0987 Mch-Chr8:7033612 Mch9g1452 Mch-Chr9:16876043 6.64E-34 dispersed
Mch9g0624 Mch-Chr9:4663637 Mch9g1452 Mch-Chr9:16876043 3.89E-36 dispersed
Mch9g1452 Mch-Chr9:16876043 Mch9g1618 Mch-Chr9:18342636 1.59E-20 dispersed
Mch9g1452 Mch-Chr9:16876043 Mch6g0853 Mch-Chr6:5919257 3.12E-37 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g1452 K17506 - csv:101208170 467.233