Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g1463 ATGTGCAGTGGCTCGAAGAATAAAGGTGCTTCCTCGGATCCTGCCATGGAAGCCAAGTTTCAGAAGCTTAACGATGGGGGTTTCTTCTCTGCGAGTTCAATTTTGCTTGAACTATCTGCCTCTGATGATGTAGAAGGGTTCAAGAGAGAGGTGGAAGAGAAGGGTTTGGATGTTGATGAGCCTAGTTGCTGGTATGGAAGAGGGATTGGGTCAAAGAAGATGGGGTTTGAAAAAAGAACTCCACTGATGATTGCTGCCATGTTTGGAAGCTCCAAGGTTGTCAAGCACATAATTGAGACAGGCAAAGCTGATGTTAATAGGGCTTGTGGTTCAGACATGGCCACTGCCCTCCACTGTGCCACTGCTGGTGGCTCTGGCTCTTCCCTTGAGACCATCAAGCTCTTGCTCGATGGATCTGCCGATGTCGAGTGCGTCGATGCTAGTGGGCGAAAACCTGTTGATTTGATTGTTTCAGCTTACAGGATGGTGTGCAATTCAGGAAGAAAGGCTATGGAGATGTTGTTGAGGGGAGATGGTGTGGCTGGGGAAGGTGATCTGAGCCTTTACCTTGACGAAGACCAGCAGAAGATCACAGCATCTCAATCTGCAAAAGAAGGAACTGACAAGAAAGAGTATCCTGTTGATGTATCGCTGCCCGACATAAACAGCGGGATATACGGTACCGATGATTTCAGGATGTATACTTTCAAAGTGAAGCCTTGTTCGAGGGCGTATTCGCACGATTGGACCGAGTGCCCTTTCGTTCATCCTGGTGAGAACGCTAGGCGAAGAGACCCCAGGAAGTACCCGTATAGCTGCGTCCCGTGCCCTGAATTCCGAAAGGGGGCATGCCAAAAGGGAGATTCCTGTGAGTATGCACATGGTGTTTTTGAATCTTGGCTCCACCCTGCTCAATACCGAACCAGGCTCTGCAAGGATGAGACCGGGTGCACGAGGAAGGTCTGCTTCTTCGCTCACAAACCTGAAGAATTGCGCCCCGTGTATGCTTCAACGGGCTCTGGCATGCCTTCACCGAGGTCCCTTTCGAGCAGCGCAGGAGATATGTCTACCATGAGCCCGTTGGCTCTTGGTTCATCATCGTTGTCGTTGCCAACTACATCAACACCTCCCATGTCTCCTTTGGCATCAGTGTCTTCCCCTAAGAACGGAAGCTTGTGGCAGAACAAGATTAACCTTACCCCTCCTGCTCTGCAACTTCCCGGTAGTCGGTTAAAGTCTGCTTTGAGTGCAAGAGATTTGGATTTGGAGATGGAACTGCTCGGGTTAGAGAAGAACGCAAGCCAATTACAACATCAGCAGCAGTTGATCGACGAGATATCCCGGCTCTCGTCTCCTTCTTACTGGAGTGGAGATGTAAGCAGGAGTGCGGAGTTGAAGCCATCAAACCTTGATGACATGTTTGGATCACTAGATTCTTCCTTGTTGTCTCAGTTTCAGGGTGCCTCACTGAGAACCCCGATCTCAGCTCAGGTACAATCTCCGACTGGGCTGCAGATACGCCAAAACATGAACCAACTTCGTGCAAGTTACCCAGCTAACTTATCATCCTCACCTGTAAAGAAACCCCCATCTTTCGGCTTCGACTCATCGAGTGCAGTGGCAGCTGCAGTGATGAACTCAAGGTCTGCTGCCTTTGCAAAACGAAGCCAGAGTTTCATCGACCGAGCTGCAGTGACCCGCCTTCCTGGGCTGACCGCAGCTGCAAACTCTGCAGCTAAAATGTCTTCCCATCTCTCCGATTGGAGCTCACCCGATGGTAAACTAGACTGGGGAATGCACGGCAACGATCTCAACAAACTCAGGAAATCTGCCTCGTTTGGGATCCGAAACAATGGCCTAGGAGCTCCCTCCTTCACGCCATCAGCAGCGGAGGAGCCAGACGTCTCCTGGGTCAACTCCCTGGTTAAAGATGTTCCCTCGAACAGTTTCGAGATGTTCGGTGCCGAGAAGCGGCAATACAACCTCAAAAGAGAGGTGAACGAGATGCTCCCGTCCTGGATGGAGCAGCAGTTGTATGCAGAACAGGAGCAGATAGTGGCATAA 2064 50.63 MCSGSKNKGASSDPAMEAKFQKLNDGGFFSASSILLELSASDDVEGFKREVEEKGLDVDEPSCWYGRGIGSKKMGFEKRTPLMIAAMFGSSKVVKHIIETGKADVNRACGSDMATALHCATAGGSGSSLETIKLLLDGSADVECVDASGRKPVDLIVSAYRMVCNSGRKAMEMLLRGDGVAGEGDLSLYLDEDQQKITASQSAKEGTDKKEYPVDVSLPDINSGIYGTDDFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGACQKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCTRKVCFFAHKPEELRPVYASTGSGMPSPRSLSSSAGDMSTMSPLALGSSSLSLPTTSTPPMSPLASVSSPKNGSLWQNKINLTPPALQLPGSRLKSALSARDLDLEMELLGLEKNASQLQHQQQLIDEISRLSSPSYWSGDVSRSAELKPSNLDDMFGSLDSSLLSQFQGASLRTPISAQVQSPTGLQIRQNMNQLRASYPANLSSSPVKKPPSFGFDSSSAVAAAVMNSRSAAFAKRSQSFIDRAAVTRLPGLTAAANSAAKMSSHLSDWSSPDGKLDWGMHGNDLNKLRKSASFGIRNNGLGAPSFTPSAAEEPDVSWVNSLVKDVPSNSFEMFGAEKRQYNLKREVNEMLPSWMEQQLYAEQEQIVA 687
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 17005084 17008987 - MC09g1108 Mch9g1463 698345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g1463 687 ProSiteProfiles Ankyrin repeat profile. 112 147 IPR002110 GO:0005515(InterPro)
Mch9g1463 687 Pfam Ankyrin repeats (3 copies) 77 144 IPR002110 GO:0005515(InterPro)
Mch9g1463 687 PANTHER UNKEMPT FAMILY MEMBER 72 645 IPR045234 -
Mch9g1463 687 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 274 295 IPR000571 GO:0046872(InterPro)
Mch9g1463 687 SMART c3hfinal6 270 296 IPR000571 GO:0046872(InterPro)
Mch9g1463 687 SMART c3hfinal6 305 328 IPR000571 GO:0046872(InterPro)
Mch9g1463 687 ProSiteProfiles Zinc finger C3H1-type profile. 270 297 IPR000571 GO:0046872(InterPro)
Mch9g1463 687 Gene3D - 271 333 - -
Mch9g1463 687 Gene3D - 32 174 IPR036770 -
Mch9g1463 687 FunFam Zinc finger CCCH domain-containing protein 66 228 296 - -
Mch9g1463 687 SMART ANK_2a 112 144 IPR002110 GO:0005515(InterPro)
Mch9g1463 687 SMART ANK_2a 77 107 IPR002110 GO:0005515(InterPro)
Mch9g1463 687 MobiDBLite consensus disorder prediction 334 387 - -
Mch9g1463 687 SUPERFAMILY Ankyrin repeat 43 154 IPR036770 -
Mch9g1463 687 MobiDBLite consensus disorder prediction 340 387 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g3199 Mch-Chr8:34150729 Mch9g1463 Mch-Chr9:17005084 5.87E-54 dispersed
Mch5g1393 Mch-Chr5:14948843 Mch9g1463 Mch-Chr9:17005084 1.46E-158 transposed
Mch8g0932 Mch-Chr8:6663184 Mch9g1463 Mch-Chr9:17005084 3.69E-142 transposed
Mch2g0837 Mch-Chr2:5731251 Mch9g1463 Mch-Chr9:17005084 1.01E-251 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44063 PF12796 Ank_2 3.90E-07 CL0465 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g1463 - - - 0.0