Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch9g1466 | ATGGCTTCCATCTCTACCAGCCCTCGCTCCGTTGAAGACATCTTCAAGGATTACAGCGCTCGACGCGCTGGCCTCGTTCGCGCCCTCACCTACGACGTCGATGAGTTTTACTCGCTTTGCGATCCTGAGAAGGAGAACTTATGTTTGTACGGACACTCCAATGAGTCTTGGGAGGTTACACTGCCTGCCGAGGAAGTTCCATCCGAGCTCCCTGAGCCAGCGTTGGGGATCAATTTTGCAAGAGATGGGATGAAGCGCAGAGACTGGCTCTCCTTGGTGGCTGTGCACAGCGATTGTTGGTTACTTTCTGTGGCGTTTTACTTTGGTGCTCGACTCAACCGCAATGAGCGGAAGCGACTATTTAGCCTGATAAATGATCTACCCACTCTATTTGAAGTTGCGTCTGGAAGGAAAGCTGTTAAAGACAAACCCAGCATGGATAGTGGAAGTAAATCCAGAAACAGCACAAAGAGGTCAATCGATGGATCAATCCGAAGCAGCAATCTGAAGTTACTTGATGAGAGTTATGGAGAGGACGAGGATGAGCACGGTGATACTCTCTGTGGGAGCTGTGGAGGGAACTACAACGCAGATGAGTTTTGGATTGGATGTGACATCTGTGAGAGGTGGTTCCACGGAAAATGTGTGAGGATAACACCTGCCAAGGCAGAAAACATCAAGCAGTACAAATGCCCCTCTTGCAGCACAAAGCGCGGAAGACCGTAG | 726 | 50.0 | MASISTSPRSVEDIFKDYSARRAGLVRALTYDVDEFYSLCDPEKENLCLYGHSNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWLLSVAFYFGARLNRNERKRLFSLINDLPTLFEVASGRKAVKDKPSMDSGSKSRNSTKRSIDGSIRSSNLKLLDESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKAENIKQYKCPSCSTKRGRP | 241 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 17072421 | 17087213 | - | MC09g1110 | Mch9g1466 | 698348 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch9g1466 | 241 | ProSitePatterns | Zinc finger PHD-type signature. | 188 | 234 | IPR019786 | - | |
Mch9g1466 | 241 | FunFam | PHD finger alfin-like protein | 180 | 236 | - | - | |
Mch9g1466 | 241 | Pfam | Alfin | 10 | 134 | IPR021998 | GO:0006355(InterPro)|GO:0042393(InterPro) | |
Mch9g1466 | 241 | Pfam | PHD-finger | 188 | 234 | IPR019787 | - | |
Mch9g1466 | 241 | SUPERFAMILY | FYVE/PHD zinc finger | 176 | 239 | IPR011011 | - | |
Mch9g1466 | 241 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 177 | 236 | IPR013083 | - | |
Mch9g1466 | 241 | SMART | PHD_3 | 187 | 235 | IPR001965 | - | |
Mch9g1466 | 241 | CDD | PHD_AL_plant | 187 | 237 | IPR044104 | - | |
Mch9g1466 | 241 | MobiDBLite | consensus disorder prediction | 141 | 161 | - | - | |
Mch9g1466 | 241 | PANTHER | CPG BINDING PROTEIN | 7 | 240 | IPR045104 | GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro) | |
Mch9g1466 | 241 | ProSiteProfiles | Zinc finger PHD-type profile. | 185 | 237 | IPR019787 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch8g3233 | Mch-Chr8:34353573 | Mch9g1466 | Mch-Chr9:17072421 | 2.49E-101 | dispersed | |
Mch9g0232 | Mch-Chr9:1738377 | Mch9g1466 | Mch-Chr9:17072421 | 1.01E-112 | dispersed | |
Mch5g1941 | Mch-Chr5:19342027 | Mch9g1466 | Mch-Chr9:17072421 | 1.03E-137 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
44064 | PF12165 | Alfin | 7.40E-67 | No_clan | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch9g1466 | K26274 | - | csv:101211934 | 481.87 |