Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g1466 ATGGCTTCCATCTCTACCAGCCCTCGCTCCGTTGAAGACATCTTCAAGGATTACAGCGCTCGACGCGCTGGCCTCGTTCGCGCCCTCACCTACGACGTCGATGAGTTTTACTCGCTTTGCGATCCTGAGAAGGAGAACTTATGTTTGTACGGACACTCCAATGAGTCTTGGGAGGTTACACTGCCTGCCGAGGAAGTTCCATCCGAGCTCCCTGAGCCAGCGTTGGGGATCAATTTTGCAAGAGATGGGATGAAGCGCAGAGACTGGCTCTCCTTGGTGGCTGTGCACAGCGATTGTTGGTTACTTTCTGTGGCGTTTTACTTTGGTGCTCGACTCAACCGCAATGAGCGGAAGCGACTATTTAGCCTGATAAATGATCTACCCACTCTATTTGAAGTTGCGTCTGGAAGGAAAGCTGTTAAAGACAAACCCAGCATGGATAGTGGAAGTAAATCCAGAAACAGCACAAAGAGGTCAATCGATGGATCAATCCGAAGCAGCAATCTGAAGTTACTTGATGAGAGTTATGGAGAGGACGAGGATGAGCACGGTGATACTCTCTGTGGGAGCTGTGGAGGGAACTACAACGCAGATGAGTTTTGGATTGGATGTGACATCTGTGAGAGGTGGTTCCACGGAAAATGTGTGAGGATAACACCTGCCAAGGCAGAAAACATCAAGCAGTACAAATGCCCCTCTTGCAGCACAAAGCGCGGAAGACCGTAG 726 50.0 MASISTSPRSVEDIFKDYSARRAGLVRALTYDVDEFYSLCDPEKENLCLYGHSNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWLLSVAFYFGARLNRNERKRLFSLINDLPTLFEVASGRKAVKDKPSMDSGSKSRNSTKRSIDGSIRSSNLKLLDESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKAENIKQYKCPSCSTKRGRP 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 17072421 17087213 - MC09g1110 Mch9g1466 698348

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g1466 241 ProSitePatterns Zinc finger PHD-type signature. 188 234 IPR019786 -
Mch9g1466 241 FunFam PHD finger alfin-like protein 180 236 - -
Mch9g1466 241 Pfam Alfin 10 134 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Mch9g1466 241 Pfam PHD-finger 188 234 IPR019787 -
Mch9g1466 241 SUPERFAMILY FYVE/PHD zinc finger 176 239 IPR011011 -
Mch9g1466 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 236 IPR013083 -
Mch9g1466 241 SMART PHD_3 187 235 IPR001965 -
Mch9g1466 241 CDD PHD_AL_plant 187 237 IPR044104 -
Mch9g1466 241 MobiDBLite consensus disorder prediction 141 161 - -
Mch9g1466 241 PANTHER CPG BINDING PROTEIN 7 240 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Mch9g1466 241 ProSiteProfiles Zinc finger PHD-type profile. 185 237 IPR019787 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g1466 K26274 - - csv:101211934 481.87
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g3233 Mch-Chr8:34353573 Mch9g1466 Mch-Chr9:17072421 2.49E-101 dispersed
Mch9g0232 Mch-Chr9:1738377 Mch9g1466 Mch-Chr9:17072421 1.01E-112 dispersed
Mch5g1941 Mch-Chr5:19342027 Mch9g1466 Mch-Chr9:17072421 1.03E-137 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch10g0597 . 1 253 Alfin-like Transcription Factor Family AT1G14510 84.2 2.0e-112 402.1
Mch8g0546 . 1 250 Alfin-like Transcription Factor Family AT1G14510 69.6 1.2e-96 349.7
Mch9g0232 . 46 293 Alfin-like Transcription Factor Family AT1G14510 66.4 2.5e-91 332.0
Mch8g3233 . 9 237 Alfin-like Transcription Factor Family AT1G14510 66.8 1.4e-86 316.2
Mch5g1941 . 7 236 Alfin-like Transcription Factor Family AT1G14510 61.3 5.8e-80 294.3
Mch9g1466 . 8 238 Alfin-like Transcription Factor Family AT1G14510 59.3 2.1e-77 285.8
Mch8g0546 . 1 252 Alfin-like Transcription Factor Family AT5G26210 74.0 1.8e-108 389.0
Mch8g3233 . 1 239 Alfin-like Transcription Factor Family AT5G26210 72.4 4.9e-103 370.9
Mch9g0232 . 46 295 Alfin-like Transcription Factor Family AT5G26210 66.9 1.9e-99 359.0
Mch10g0597 . 9 255 Alfin-like Transcription Factor Family AT5G26210 73.8 7.9e-93 337.0
Mch5g1941 . 4 240 Alfin-like Transcription Factor Family AT5G26210 58.6 1.1e-81 300.1
Mch9g1466 . 7 240 Alfin-like Transcription Factor Family AT5G26210 58.3 1.2e-80 296.6
Mch8g0546 . 1 252 Alfin-like Transcription Factor Family AT3G42790 70.1 3.8e-100 361.3
Mch9g0232 . 46 295 Alfin-like Transcription Factor Family AT3G42790 64.9 5.2e-97 350.9
Mch8g3233 . 1 239 Alfin-like Transcription Factor Family AT3G42790 66.9 1.7e-92 335.9
Mch10g0597 . 9 257 Alfin-like Transcription Factor Family AT3G42790 71.2 1.0e-89 326.6
Mch9g1466 . 7 240 Alfin-like Transcription Factor Family AT3G42790 59.4 4.4e-80 294.7
Mch5g1941 . 7 238 Alfin-like Transcription Factor Family AT3G42790 58.3 3.7e-79 291.6
Mch9g1466 . 1 240 Alfin-like Transcription Factor Family AT5G05610 77.6 6.1e-111 397.1
Mch5g1941 . 4 240 Alfin-like Transcription Factor Family AT5G05610 76.1 7.0e-107 383.6
Mch8g0546 . 8 252 Alfin-like Transcription Factor Family AT5G05610 66.1 3.7e-92 334.7
Mch9g0232 . 55 295 Alfin-like Transcription Factor Family AT5G05610 64.9 5.4e-91 330.9
Mch8g3233 . 8 239 Alfin-like Transcription Factor Family AT5G05610 61.5 7.0e-83 303.9
Mch10g0597 . 9 255 Alfin-like Transcription Factor Family AT5G05610 61.5 2.0e-82 302.4
Mch9g1466 . 43 240 Alfin-like Transcription Factor Family AT3G11200 81.1 2.2e-94 342.0
Mch5g1941 . 42 240 Alfin-like Transcription Factor Family AT3G11200 75.9 1.0e-86 316.6
Mch8g0546 . 44 252 Alfin-like Transcription Factor Family AT3G11200 65.1 2.3e-75 278.9
Mch9g0232 . 89 295 Alfin-like Transcription Factor Family AT3G11200 65.4 1.2e-74 276.6
Mch8g3233 . 33 239 Alfin-like Transcription Factor Family AT3G11200 64.1 2.0e-74 275.8
Mch10g0597 . 44 255 Alfin-like Transcription Factor Family AT3G11200 61.8 2.3e-67 252.3
Mch10g0597 . 1 161 Alfin-like Transcription Factor Family AT2G02470 87.6 2.5e-78 288.9
Mch8g0546 . 1 158 Alfin-like Transcription Factor Family AT2G02470 77.8 2.4e-65 245.7
Mch9g0232 . 46 203 Alfin-like Transcription Factor Family AT2G02470 76.6 1.3e-63 240.0
Mch8g3233 . 1 147 Alfin-like Transcription Factor Family AT2G02470 72.8 1.3e-58 223.4
Mch5g1941 . 7 166 Alfin-like Transcription Factor Family AT2G02470 64.8 1.5e-54 209.9
Mch9g1466 . 8 155 Alfin-like Transcription Factor Family AT2G02470 67.5 3.6e-53 205.3
Mch8g0546 . 1 167 Alfin-like Transcription Factor Family AT5G20510 77.4 1.4e-73 272.7
Mch9g0232 . 46 207 Alfin-like Transcription Factor Family AT5G20510 77.6 1.2e-69 259.6
Mch10g0597 . 3 163 Alfin-like Transcription Factor Family AT5G20510 73.0 4.0e-65 244.6
Mch8g3233 . 1 153 Alfin-like Transcription Factor Family AT5G20510 72.1 1.3e-63 239.6
Mch5g1941 . 6 156 Alfin-like Transcription Factor Family AT5G20510 63.1 1.3e-52 203.0
Mch9g1466 . 7 157 Alfin-like Transcription Factor Family AT5G20510 62.4 3.0e-52 201.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001062 3 2 2 5 5 2 4 2 3 2 2 2 3 2 2 4 2 2 4 3 2 2 2 3 3 3 2 3 3 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44064 PF12165 Alfin 7.40E-67 No_clan Mch TF