Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g1466 ATGGCTTCCATCTCTACCAGCCCTCGCTCCGTTGAAGACATCTTCAAGGATTACAGCGCTCGACGCGCTGGCCTCGTTCGCGCCCTCACCTACGACGTCGATGAGTTTTACTCGCTTTGCGATCCTGAGAAGGAGAACTTATGTTTGTACGGACACTCCAATGAGTCTTGGGAGGTTACACTGCCTGCCGAGGAAGTTCCATCCGAGCTCCCTGAGCCAGCGTTGGGGATCAATTTTGCAAGAGATGGGATGAAGCGCAGAGACTGGCTCTCCTTGGTGGCTGTGCACAGCGATTGTTGGTTACTTTCTGTGGCGTTTTACTTTGGTGCTCGACTCAACCGCAATGAGCGGAAGCGACTATTTAGCCTGATAAATGATCTACCCACTCTATTTGAAGTTGCGTCTGGAAGGAAAGCTGTTAAAGACAAACCCAGCATGGATAGTGGAAGTAAATCCAGAAACAGCACAAAGAGGTCAATCGATGGATCAATCCGAAGCAGCAATCTGAAGTTACTTGATGAGAGTTATGGAGAGGACGAGGATGAGCACGGTGATACTCTCTGTGGGAGCTGTGGAGGGAACTACAACGCAGATGAGTTTTGGATTGGATGTGACATCTGTGAGAGGTGGTTCCACGGAAAATGTGTGAGGATAACACCTGCCAAGGCAGAAAACATCAAGCAGTACAAATGCCCCTCTTGCAGCACAAAGCGCGGAAGACCGTAG 726 50.0 MASISTSPRSVEDIFKDYSARRAGLVRALTYDVDEFYSLCDPEKENLCLYGHSNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWLLSVAFYFGARLNRNERKRLFSLINDLPTLFEVASGRKAVKDKPSMDSGSKSRNSTKRSIDGSIRSSNLKLLDESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKAENIKQYKCPSCSTKRGRP 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 17072421 17087213 - MC09g1110 Mch9g1466 698348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g1466 241 ProSitePatterns Zinc finger PHD-type signature. 188 234 IPR019786 -
Mch9g1466 241 FunFam PHD finger alfin-like protein 180 236 - -
Mch9g1466 241 Pfam Alfin 10 134 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Mch9g1466 241 Pfam PHD-finger 188 234 IPR019787 -
Mch9g1466 241 SUPERFAMILY FYVE/PHD zinc finger 176 239 IPR011011 -
Mch9g1466 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 236 IPR013083 -
Mch9g1466 241 SMART PHD_3 187 235 IPR001965 -
Mch9g1466 241 CDD PHD_AL_plant 187 237 IPR044104 -
Mch9g1466 241 MobiDBLite consensus disorder prediction 141 161 - -
Mch9g1466 241 PANTHER CPG BINDING PROTEIN 7 240 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Mch9g1466 241 ProSiteProfiles Zinc finger PHD-type profile. 185 237 IPR019787 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g3233 Mch-Chr8:34353573 Mch9g1466 Mch-Chr9:17072421 2.49E-101 dispersed
Mch9g0232 Mch-Chr9:1738377 Mch9g1466 Mch-Chr9:17072421 1.01E-112 dispersed
Mch5g1941 Mch-Chr5:19342027 Mch9g1466 Mch-Chr9:17072421 1.03E-137 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44064 PF12165 Alfin 7.40E-67 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g1466 K26274 - csv:101211934 481.87