Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g1482 CTCAAGGTCTTAGACCTCAGATTCAACAGTTTCAGTGGTCATATCCCATTAGAAGTTGGCCACTTGTTTCGGCTTGAAATTCTAAACCTCCAATCCAACTCTTTCAGTGGCAAAATACCAAGAAACATATCAGGTTGTTCCAATCTATCACGTCTTAGTTTAGGTTCCAACACCCTGGTTGGTAAACTTCCTACTGAACTTGGTTTGTTATCCAAGCTTATGATCCTTTCTTTATCAAACAATAGTCTAGTGGGGGAAATTTTACCTTCTCTTGGCAATCTATCTTCTCTTGAAGTATTCACAATTACAATCAATAATTTTCAGGGGAGCATTCCTGAATCCTTTGGACAGTTGAGAAGACTGAATACTCTTTACCTTGGTGCAAACAAGTTGAGTGGTCAGGTCCCTGTTTCCATATACAATATCACCTCACTTAAAAACCTTTCTTTTCCAGTAAACCAGCTTCAAGGGAGTCTTCCCCAAAACTTGGCACATCTACTTCCAAACGTCGAGATGTTGAGACTCCATACGAACCAATTGCATGGACCGATACCAATCTCGATCTCCAATGCCTCGAAGCTCTCGATTTTTTCGGTTTCCAACAATCAGTTTACGGGAAAAGTCCCTGTCCTAGCAAACCTATACTCTCTCCAAGAATTAGGCTTATCTAATAATGTTTTTACAAACGATGACTTGAGTTTTCTATCCCCACTAGTTAACTACACCAATTTGGAAACTTTGCAGATAAGTGACAACAACTTTGGAGGAATCTTGCCGGAGTACATAAGCAACTTCTCCACAAAGCTCGCTAAAATGACAATCGCTAGGAATCAAATACGAGGGAAGATCCCCAGGGAGATTGGAAATCTTATCAACTTGGAAGCCTTGGGAATGGAGACAAATCAGTTAACTGGTACAATACCAGGATCAATAGGTAAACTGCAAAAACTTCAATCTCTATTTCTTAATGGAAATAGACTTGTAGGGGCTATCCCACCTTCTATAGGCAATTTAACCATGTTGATAAGATTAAATCTAAGGGAAAATAATTTGGAGGGAAGCATACCACCAAGTATTGGGCAATGCCAACAATTGCTAGAGATGTCTCTTGCCCTTAATAATCTTAATGGTTCCATACCAAAGGAGGTCTTTGTTACATCATTGTTTGCTTTTGATTGGTATGAAAATCATTTGATTGGTCCCATTCCCATGGAAGTGAGCAAGTTGGTAAACCTTAATTATATGAATATTTCCAAGAACAAGTTATCTGGGGAGCTTCCAAATAGTTTAGGTAGTTGCATACGCCTAGAGACTCTAGCCTTAAGTGGCAACATGATTCGAGGAACCATTCCCCAGTCTTTGAGCTCCTTGAGAGGAATTCAGATTCTTGACCTGTCTCAAAATAACTTGTCTGGCAAAATTCCAGAATATTTTGAGAGCTTCCAGGTTTTGGAGTACTTGAATCTCTCATTCAACAACTTTGACGGTGAGTTACCTATGCAAGGGGTCTTTAAGAATGCAAGTAAGTTTTCAGTCACAGGGAACTTAAGACTTTGTGGAGGAATACCTGAACTAAAGCTATCCAGCTGCAAATCCAACCAGCCCAAGAAATTGTCTCCTAAGCTAAAACTATTCGTCATAATTGCTGGTGCAATTATTGGTCTAATCTCAATGTTGGCTTTTGCTGCTCTATTTTGGCTGAGGAAAAAAAGAAGCATGCTTCCACCAAGCTTGTTGCAACCTTCTAGTTTGCAACTATCATATAATGATCTCTTCAAAGCAACTAATGGATTTGCTCCTTCTAATTTGATCGGCAAAGGTGGTTTTGGTTCAGTGTATAGAGGAATTCTTGATCCAGATGAGATGGTCGTTGCAGTGAAAGTGTTCAACCTTCAATACCGAGGATCCTTCAAGAGCTTCATGGCTGAATGTGAAGCCTTGAGAAATATTAGGCATCGAAATCTTGTGAAGTCGCTAACCGTGTGTTCAAGTATAGATTTTCAAGGTAATGACTTTATGGCATTGGTCTATGAGTTCATGGTGAATGGGAGCTTAGAAGATTGGTTGTATCCTGTTGATGGAAGTCATCAAGGTTTGAATCTTATGCAAAGGTTAAATATTGCCATAGAGGTGGCCAGTGCTTTGGAGTATTTGCATAATCAATGCCACATAAAAATTGTCCATTGTGATCTAAAGCCAAGCAACATTCTTCTTGATGGTGACATGACTGCCCACATAGGAGATTTTGGATTAGCAAGAATTATTCATGAAGCTTCTGAGCATTTATCTTTGGAGCAGACAAGTTCAATTGGACTAAGAGGTTCTATAGGCTATACCGCCCCAGAATATGGGATGGGTGGTAAAGCATCAACTGATGGTGATATGTATAGCTATGGAATCTTGCTACTGGAGATGTTCACGGGGAAAAAACCAACTGAT 2439 39.69 LKVLDLRFNSFSGHIPLEVGHLFRLEILNLQSNSFSGKIPRNISGCSNLSRLSLGSNTLVGKLPTELGLLSKLMILSLSNNSLVGEILPSLGNLSSLEVFTITINNFQGSIPESFGQLRRLNTLYLGANKLSGQVPVSIYNITSLKNLSFPVNQLQGSLPQNLAHLLPNVEMLRLHTNQLHGPIPISISNASKLSIFSVSNNQFTGKVPVLANLYSLQELGLSNNVFTNDDLSFLSPLVNYTNLETLQISDNNFGGILPEYISNFSTKLAKMTIARNQIRGKIPREIGNLINLEALGMETNQLTGTIPGSIGKLQKLQSLFLNGNRLVGAIPPSIGNLTMLIRLNLRENNLEGSIPPSIGQCQQLLEMSLALNNLNGSIPKEVFVTSLFAFDWYENHLIGPIPMEVSKLVNLNYMNISKNKLSGELPNSLGSCIRLETLALSGNMIRGTIPQSLSSLRGIQILDLSQNNLSGKIPEYFESFQVLEYLNLSFNNFDGELPMQGVFKNASKFSVTGNLRLCGGIPELKLSSCKSNQPKKLSPKLKLFVIIAGAIIGLISMLAFAALFWLRKKRSMLPPSLLQPSSLQLSYNDLFKATNGFAPSNLIGKGGFGSVYRGILDPDEMVVAVKVFNLQYRGSFKSFMAECEALRNIRHRNLVKSLTVCSSIDFQGNDFMALVYEFMVNGSLEDWLYPVDGSHQGLNLMQRLNIAIEVASALEYLHNQCHIKIVHCDLKPSNILLDGDMTAHIGDFGLARIIHEASEHLSLEQTSSIGLRGSIGYTAPEYGMGGKASTDGDMYSYGILLLEMFTGKKPTD 813
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 17229565 17232198 + MC09g1124 Mch9g1482 698364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g1482 813 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 680 813 - -
Mch9g1482 813 Gene3D Transferase(Phosphotransferase) domain 1 680 813 - -
Mch9g1482 813 ProSiteProfiles Protein kinase domain profile. 598 813 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch9g1482 813 Pfam Leucine rich repeat 435 494 IPR001611 GO:0005515(InterPro)
Mch9g1482 813 Gene3D Phosphorylase Kinase; domain 1 579 679 - -
Mch9g1482 813 ProSitePatterns Serine/Threonine protein kinases active-site signature. 726 738 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch9g1482 813 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 1 230 - -
Mch9g1482 813 FunFam LRR receptor-like serine/threonine-protein kinase EFR 569 679 - -
Mch9g1482 813 SUPERFAMILY L domain-like 267 520 - -
Mch9g1482 813 FunFam LRR receptor-like serine/threonine-protein kinase EFR 231 536 - -
Mch9g1482 813 PANTHER OS04G0122200 PROTEIN 5 813 IPR051809 -
Mch9g1482 813 SMART LRR_typ_2 338 362 IPR003591 -
Mch9g1482 813 SMART LRR_typ_2 22 46 IPR003591 -
Mch9g1482 813 SMART LRR_typ_2 481 506 IPR003591 -
Mch9g1482 813 SMART LRR_typ_2 409 433 IPR003591 -
Mch9g1482 813 SMART LRR_typ_2 314 337 IPR003591 -
Mch9g1482 813 SMART LRR_typ_2 118 142 IPR003591 -
Mch9g1482 813 SMART LRR_typ_2 457 480 IPR003591 -
Mch9g1482 813 SMART LRR_typ_2 70 94 IPR003591 -
Mch9g1482 813 SUPERFAMILY Protein kinase-like (PK-like) 571 812 IPR011009 -
Mch9g1482 813 SUPERFAMILY L domain-like 1 280 - -
Mch9g1482 813 ProSitePatterns Protein kinases ATP-binding region signature. 604 627 IPR017441 GO:0005524(InterPro)
Mch9g1482 813 Gene3D Ribonuclease Inhibitor 1 210 IPR032675 -
Mch9g1482 813 Gene3D Ribonuclease Inhibitor 211 538 IPR032675 -
Mch9g1482 813 Pfam Protein kinase domain 601 812 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch9g1482 813 SMART serkin_6 598 813 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch9g1482 813 Pfam Leucine Rich Repeat 1 22 IPR001611 GO:0005515(InterPro)
Mch9g1482 813 Pfam Leucine Rich Repeat 316 338 IPR001611 GO:0005515(InterPro)
Mch9g1482 813 Pfam Leucine Rich Repeat 341 362 IPR001611 GO:0005515(InterPro)
Mch9g1482 813 Pfam Leucine Rich Repeat 243 265 IPR001611 GO:0005515(InterPro)
Mch9g1482 813 Pfam Leucine Rich Repeat 24 46 IPR001611 GO:0005515(InterPro)
Mch9g1482 813 Pfam Leucine Rich Repeat 72 94 IPR001611 GO:0005515(InterPro)
Mch9g1482 813 Pfam Leucine Rich Repeat 411 433 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g2509 Mch-Chr4:25804281 Mch9g1482 Mch-Chr9:17229565 3.41E-132 dispersed
Mch8g0651 Mch-Chr8:4676399 Mch9g1482 Mch-Chr9:17229565 3.56E-80 dispersed
Mch8g0653 Mch-Chr8:4681074 Mch9g1482 Mch-Chr9:17229565 9.19E-79 dispersed
Mch8g1057 Mch-Chr8:7425633 Mch9g1482 Mch-Chr9:17229565 5.85E-58 dispersed
Mch9g1482 Mch-Chr9:17229565 Mch10g0170 Mch-Chr10:1013841 5.29E-45 dispersed
Mch5g1924 Mch-Chr5:19170040 Mch9g1482 Mch-Chr9:17229565 1.81E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77702 PF00069 Pkinase 5.40E-41 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g1482 - - - 0.0