Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g1485 ATGGGTTCCGTATATCGTGATCGGACGACGGAGTTCCGGTCACTGTCGGAGACGCTGAAGAAGGCCGGAGGAGTCACAGCCGCCGTCAGTCCAGCTAAAAATGACCCGTCGGCGTCCGTACCGTCCGGATCACCGGCCGCTACACGATCGGAATTCAGCAGGAAGGCCTCGCGTATCGGATTGGGAATCCAAGAAACCTCTCAGAAGATCGTGAGGCTTGCTCAGTTGGCAAAAAGATCATCAATGTTTGATGATCCCATTAGGGAAATACAGGAATTGACCGCTTTGATTAAGAATGATATTACATCATTGAATGTAGCTATCACAGATTTGCAAACCATCCAAAAGGTGGAAACATCAGATGGAAATTATTCCCAGGATAGAGTGGTTCATTCAACAGCAGTATGTGATGACCTGAAGAGCAAACTTATGGGAGCTACAAAACAGCTTCAAGATGTGTTAACCGCAAGAACAGAGAATATCAAGGCCAACGAGAGTCGGAGGCAAATATTTTCTGCAAATGCAAACAGAGAAATTCCTTTTCAAAATCAAGCCAAAATTGTAACTCAACCACCACCTTGGTCTAGTAATACATCTGAAAATGCCCAATCATCCATGTTGTTGTCAAATGGGGCTCAAGTTGGGGGTCAATTGAGACGAAGGTTAGCTGTGGAGAACACTCCATCCCAGCAAATGGAGATGTCAATGTTACAGCAGGTGGTTCCTAGGCAGGAAAATTATTCACAAAGTCGTTCAGTTGCTCTCCATAATGTGGAATCCACCATTTCAGAACTCAGCGGAATTTTTACACATCTAGCCACCATGGTTGCACATCAAGGAGAACTTGCTATCAGGATCGATGACAACATGGACGAATCATTGGCAAATGTAGAAGGCGCTCGAAGTGCGCTTTTAAGGCATCTTAACCAGATATCATCAAACAGATGGCTTCTTATCAAAATATTTGCCATTTTAATACTTTTCTTGATGGTCTTCATTTTCTTGGCATAA 1011 44.02 MGSVYRDRTTEFRSLSETLKKAGGVTAAVSPAKNDPSASVPSGSPAATRSEFSRKASRIGLGIQETSQKIVRLAQLAKRSSMFDDPIREIQELTALIKNDITSLNVAITDLQTIQKVETSDGNYSQDRVVHSTAVCDDLKSKLMGATKQLQDVLTARTENIKANESRRQIFSANANREIPFQNQAKIVTQPPPWSSNTSENAQSSMLLSNGAQVGGQLRRRLAVENTPSQQMEMSMLQQVVPRQENYSQSRSVALHNVESTISELSGIFTHLATMVAHQGELAIRIDDNMDESLANVEGARSALLRHLNQISSNRWLLIKIFAILILFLMVFIFLA 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 17258911 17262697 - MC09g1127 Mch9g1485 698367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g1485 336 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 245 307 IPR000727 -
Mch9g1485 336 Gene3D - 46 300 - -
Mch9g1485 336 SMART tSNARE_6 240 307 IPR000727 -
Mch9g1485 336 CDD SNARE_syntaxin5 248 333 - -
Mch9g1485 336 SUPERFAMILY t-snare proteins 49 300 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Mch9g1485 336 MobiDBLite consensus disorder prediction 32 51 - -
Mch9g1485 336 Pfam SNARE domain 282 333 IPR000727 -
Mch9g1485 336 ProSitePatterns Syntaxin / epimorphin family signature. 251 290 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Mch9g1485 336 PANTHER SYNTAXIN 61 326 IPR045242 GO:0000139(PANTHER)|GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006888(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Mch9g1485 336 MobiDBLite consensus disorder prediction 23 51 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g0402 Mch-Chr8:2871580 Mch9g1485 Mch-Chr9:17258911 3.73E-89 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g1485 K08490 - csv:101213786 533.102