Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g1488 ATGGAGGGAAAGGAAGAAGACGTAAGACTCGGGGCCAACAAGTTCACGGAGCGGCAGCCCATCGGCACGGCGGCCCAGAGCCAAGACGACGGCGCCAAGGACTACAAGGAGCCACCGCCGGCGCCACTCTTCGAGGCCGGGGAGCTCACCTCCTGGTCCTTCTACCGGGCCGGCATCGCCGAGTTCATCGCCACCTTCCTCTTCCTCTACGTCACCGTTTTGACCGTCATGGGCGTCGTCCGCTCCAAAGAGGCCAAGGGCAACACCTGCTCCACCGTCGGCATCCAGGGCATCGCCTGGGCCTTCGGCGGCATGATCTTCGCCCTAGTCTACTGCACCGCCGGCATCTCCGGCGGCCACATCAACCCCGCCGTCACCTTCGGCCTCTTCCTCGCCAGGAAGCTCTCCCTGACCAGGGCCGTCTTTTACATGGTCATGCAGTGCCTCGGCGCCATCGCCGGCGCCGGCGTCGTCAAGGGCTTCCAACCCAAGCCCTACGAGAGGCTCAACGGCGGAGCTAACTTCGTCGCCCCCGGCTACACTAAAGGCGACGGCCTCGGCGCCGAGATCGTCGGCACCTTCATCCTCGTTTACACCGTCTTCTCCGCTACCGATGCCAAACGAAGCGCCAGAGACTCCCACGTTCCGATTTTGGCTCCCCTGCCAATTGGGTTCGCCGTGTTCTTGGTTCACTTGGCGACGATTCCGATCACCGGCACCGGCATCAACCCGGCCCGGAGCTTGGGCGCCGCCATCGTCTTCAACAAGGACTTCGCCTGGGATGACCACTGGATTTTCTGGGTTGGACCATTTATCGGAGCAGCACTGGCAGCTCTGTACCACCAAGTGGTGATCAGAGCCATTCCCTTCAAGTCCAAGTGA 882 62.59 MEGKEEDVRLGANKFTERQPIGTAAQSQDDGAKDYKEPPPAPLFEAGELTSWSFYRAGIAEFIATFLFLYVTVLTVMGVVRSKEAKGNTCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMVMQCLGAIAGAGVVKGFQPKPYERLNGGANFVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIVFNKDFAWDDHWIFWVGPFIGAALAALYHQVVIRAIPFKSK 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 17282187 17283687 + MC09g_new0359 Mch9g1488 698370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g1488 293 PRINTS Major intrinsic protein family signature 264 284 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch9g1488 293 PRINTS Major intrinsic protein family signature 102 126 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch9g1488 293 PRINTS Major intrinsic protein family signature 224 246 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch9g1488 293 PRINTS Major intrinsic protein family signature 139 158 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch9g1488 293 PRINTS Major intrinsic protein family signature 56 75 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch9g1488 293 PRINTS Major intrinsic protein family signature 188 206 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch9g1488 293 MobiDBLite consensus disorder prediction 1 37 - -
Mch9g1488 293 FunFam Probable aquaporin PIP1-2 41 293 - -
Mch9g1488 293 Pfam Major intrinsic protein 48 281 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch9g1488 293 Gene3D Glycerol uptake facilitator protein. 41 292 IPR023271 -
Mch9g1488 293 ProSitePatterns MIP family signature. 120 128 IPR022357 -
Mch9g1488 293 SUPERFAMILY Aquaporin-like 48 286 IPR023271 -
Mch9g1488 293 CDD MIP 56 284 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch9g1488 293 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 5 292 IPR034294 GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0009414(PANTHER)|GO:0009506(PANTHER)|GO:0015250(PANTHER)
Mch9g1488 293 NCBIfam MIP family channel protein 60 281 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g2615 Mch-Chr6:27948766 Mch9g1488 Mch-Chr9:17282187 5.98E-21 dispersed
Mch9g1488 Mch-Chr9:17282187 Mch9g1784 Mch-Chr9:19720111 1.04E-134 dispersed
Mch9g1488 Mch-Chr9:17282187 Mch9g1489 Mch-Chr9:17287242 2.08E-202 tandem
Mch6g2400 Mch-Chr6:25918660 Mch9g1488 Mch-Chr9:17282187 2.04E-180 transposed
Mch5g1920 Mch-Chr5:19135298 Mch9g1488 Mch-Chr9:17282187 1.52E-163 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g1488 K09872 - csv:101215145 555.444