Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch9g1488 | ATGGAGGGAAAGGAAGAAGACGTAAGACTCGGGGCCAACAAGTTCACGGAGCGGCAGCCCATCGGCACGGCGGCCCAGAGCCAAGACGACGGCGCCAAGGACTACAAGGAGCCACCGCCGGCGCCACTCTTCGAGGCCGGGGAGCTCACCTCCTGGTCCTTCTACCGGGCCGGCATCGCCGAGTTCATCGCCACCTTCCTCTTCCTCTACGTCACCGTTTTGACCGTCATGGGCGTCGTCCGCTCCAAAGAGGCCAAGGGCAACACCTGCTCCACCGTCGGCATCCAGGGCATCGCCTGGGCCTTCGGCGGCATGATCTTCGCCCTAGTCTACTGCACCGCCGGCATCTCCGGCGGCCACATCAACCCCGCCGTCACCTTCGGCCTCTTCCTCGCCAGGAAGCTCTCCCTGACCAGGGCCGTCTTTTACATGGTCATGCAGTGCCTCGGCGCCATCGCCGGCGCCGGCGTCGTCAAGGGCTTCCAACCCAAGCCCTACGAGAGGCTCAACGGCGGAGCTAACTTCGTCGCCCCCGGCTACACTAAAGGCGACGGCCTCGGCGCCGAGATCGTCGGCACCTTCATCCTCGTTTACACCGTCTTCTCCGCTACCGATGCCAAACGAAGCGCCAGAGACTCCCACGTTCCGATTTTGGCTCCCCTGCCAATTGGGTTCGCCGTGTTCTTGGTTCACTTGGCGACGATTCCGATCACCGGCACCGGCATCAACCCGGCCCGGAGCTTGGGCGCCGCCATCGTCTTCAACAAGGACTTCGCCTGGGATGACCACTGGATTTTCTGGGTTGGACCATTTATCGGAGCAGCACTGGCAGCTCTGTACCACCAAGTGGTGATCAGAGCCATTCCCTTCAAGTCCAAGTGA | 882 | 62.59 | MEGKEEDVRLGANKFTERQPIGTAAQSQDDGAKDYKEPPPAPLFEAGELTSWSFYRAGIAEFIATFLFLYVTVLTVMGVVRSKEAKGNTCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMVMQCLGAIAGAGVVKGFQPKPYERLNGGANFVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIVFNKDFAWDDHWIFWVGPFIGAALAALYHQVVIRAIPFKSK | 293 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 17282187 | 17283687 | + | MC09g_new0359 | Mch9g1488 | 698370 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch9g1488 | 293 | PRINTS | Major intrinsic protein family signature | 264 | 284 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Mch9g1488 | 293 | PRINTS | Major intrinsic protein family signature | 102 | 126 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Mch9g1488 | 293 | PRINTS | Major intrinsic protein family signature | 224 | 246 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Mch9g1488 | 293 | PRINTS | Major intrinsic protein family signature | 139 | 158 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Mch9g1488 | 293 | PRINTS | Major intrinsic protein family signature | 56 | 75 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Mch9g1488 | 293 | PRINTS | Major intrinsic protein family signature | 188 | 206 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Mch9g1488 | 293 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
Mch9g1488 | 293 | FunFam | Probable aquaporin PIP1-2 | 41 | 293 | - | - | |
Mch9g1488 | 293 | Pfam | Major intrinsic protein | 48 | 281 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Mch9g1488 | 293 | Gene3D | Glycerol uptake facilitator protein. | 41 | 292 | IPR023271 | - | |
Mch9g1488 | 293 | ProSitePatterns | MIP family signature. | 120 | 128 | IPR022357 | - | |
Mch9g1488 | 293 | SUPERFAMILY | Aquaporin-like | 48 | 286 | IPR023271 | - | |
Mch9g1488 | 293 | CDD | MIP | 56 | 284 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Mch9g1488 | 293 | PANTHER | AQUAPORIN OR AQUAGLYCEROPORIN RELATED | 5 | 292 | IPR034294 | GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0009414(PANTHER)|GO:0009506(PANTHER)|GO:0015250(PANTHER) | |
Mch9g1488 | 293 | NCBIfam | MIP family channel protein | 60 | 281 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch6g2615 | Mch-Chr6:27948766 | Mch9g1488 | Mch-Chr9:17282187 | 5.98E-21 | dispersed | |
Mch9g1488 | Mch-Chr9:17282187 | Mch9g1784 | Mch-Chr9:19720111 | 1.04E-134 | dispersed | |
Mch9g1488 | Mch-Chr9:17282187 | Mch9g1489 | Mch-Chr9:17287242 | 2.08E-202 | tandem | |
Mch6g2400 | Mch-Chr6:25918660 | Mch9g1488 | Mch-Chr9:17282187 | 2.04E-180 | transposed | |
Mch5g1920 | Mch-Chr5:19135298 | Mch9g1488 | Mch-Chr9:17282187 | 1.52E-163 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch9g1488 | K09872 | - | csv:101215145 | 555.444 |