Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g1505 ATGCGAAGGCTTACTCTCTTTGTTGCAGTCTCATTTGACCAAGGTTCAGCCTACCACAGTTGCAGACCCTGGACAATCTCATGTTGCAGGTCTGAAACTGAAATTACTAATGAGACTGCTGTCTCTCATGAGACTGCCCCTATTGTTCGTCGTTCTTGCCGACAAATTAAACGGCCTTCTTATTTGCAAGACTGTCATTGTGGCCTTATCAGTACTACTAGTCCTTCCACTTCCTCGGTTACGTATCCTTTGCAGCAACACTTGGCCTATGACAAATTGTCTCCTGTCTACAGACATTTTGTCTTAAATATATCCACTTCCTATGAGCCTCAGTTCTATCATCAAGCGGTTCCTTTTTCACATTGGCGTGATGCTATGAGTGTTGAGTTACAAGCCATGGAAGACAACAATACTTGGTCTATAGTCCCCTTATCCTCGGGTCAGCATTCCATAGGTTGCAAATGGGTGTACAAGATTAAACACAAGTCTGATGGGTCGATTGATCGTTACAAGGCTCCTTTGGTTGCCAAAGGCTACACTCAACAGGAAGGACTAGATTATATTGAAACGTTTTCTCCTGTGGCCAAAATGGTTACTGTGAAGGTACTTCTAACTTTTGCTGTCTCTTTTAATTGGCCACTTATCCAACTTGACGTTAACAATGCCTTCCTTCATGGTGACTTACATGAGGAAGTTTATATGGATTTACTTCTTGGGTATAAGCATGCTAAGATATCTCCTCAGGGGGAGCGTTATGTTTGTCGTCTTCATAAGTCGATTTATGGCCTTAAGCAAGCCTCTCGCCAATGGTTTGACAAGTTTACTCATGCTCTTTTGCTTCTTGGTTTCTCTCAAACCAAGTCGAATTATTCGTTGTTTGTTCGTGGCTCGAGTTCTTCTTTTGTTGCACTTCTTCTTTATGTGGATGATATAATCATCACAGGGGCATCTTCTTCTTTTATTACTACCTTAAAAGTGCATCTTAACAGTGTTTTCAAGCTTAAGGATTTGGGACCCTTGCGTTATTTTTTGGGACTTGAATTGGCAAGGTCTTCTGCTGGTTTATTTATTTCCCAAAGGCATTATACTCTTCAGCTCTTGGAGGATACGGGTTTCTTGGCTTCTAAGCCGTGTTCTGTTCCATTGGATCCTAATATGAGATTGTCCAATTCTGATGGTTCGTTGCTTGAAGATCCTTCTGAATATCGACGTCTTATCGGGCGCCTTTTGTATCTCACAATATCTCGTCCTGATATTACGTTTGCTGTACACAAGCTCAGTCAGTATGTTTCTGCCCCTCGTCATCCACATCTTGCTGCCGTCTACTTTTTACTTAGGTACTTGAAAGGTTGTCCTGGACAAGGTATTTTGCTGCCTCCTTCCAAGACTTTTCAACTTCGTGCCTTTGCAGATGCCGACTGGGGTTCTTGTTTAGACTCTCGGAAGTCTACGACTGGATATTGTGTATTCTTGGGTGATTCGCTTGTTTCTTGGAAAGCGAAGAAACAGAGCACGGTTTCAAGATCGTCTGCTGAAGCAGAATATAGAGCCCTTGCTACCACTGTTAGTGAACTTGTCTGGATTTCCTATCTCTTGAAGGATTTAAAGGTCTCGGTTCAGTCTCCTGTACTTTTATTTTGTGATAATCAGGCTGCGATTCATCTTGCCTCTAATCCTTCCTTTCACGAGCGTACAAAGCATATTGAATTGGATTGTCACTTTATTCGTGATAAAATTGTGGATGGTACTATCAAGCTTCTGCCGGTTCGAACAGATTTGCAGCTGGCAGACATTTTCACCAAGGCTTTGTCGTCTCAATCTCTTTCTTTCTTCTTGTCCAAGATGGGTGTACTTAATCCCTTCCTCCCATCATGGCCTATATATATATATGGCCTTATTCCTTTAATAAAGGTTATGCAAGTTTTAAGTTACTCTAAGTTACTCTCTCGTTTCAATAATTTCCAAAAAAATAACTGTAATTTATTAATCAGAAATACATAA 2001 41.18 MRRLTLFVAVSFDQGSAYHSCRPWTISCCRSETEITNETAVSHETAPIVRRSCRQIKRPSYLQDCHCGLISTTSPSTSSVTYPLQQHLAYDKLSPVYRHFVLNISTSYEPQFYHQAVPFSHWRDAMSVELQAMEDNNTWSIVPLSSGQHSIGCKWVYKIKHKSDGSIDRYKAPLVAKGYTQQEGLDYIETFSPVAKMVTVKVLLTFAVSFNWPLIQLDVNNAFLHGDLHEEVYMDLLLGYKHAKISPQGERYVCRLHKSIYGLKQASRQWFDKFTHALLLLGFSQTKSNYSLFVRGSSSSFVALLLYVDDIIITGASSSFITTLKVHLNSVFKLKDLGPLRYFLGLELARSSAGLFISQRHYTLQLLEDTGFLASKPCSVPLDPNMRLSNSDGSLLEDPSEYRRLIGRLLYLTISRPDITFAVHKLSQYVSAPRHPHLAAVYFLLRYLKGCPGQGILLPPSKTFQLRAFADADWGSCLDSRKSTTGYCVFLGDSLVSWKAKKQSTVSRSSAEAEYRALATTVSELVWISYLLKDLKVSVQSPVLLFCDNQAAIHLASNPSFHERTKHIELDCHFIRDKIVDGTIKLLPVRTDLQLADIFTKALSSQSLSFFLSKMGVLNPFLPSWPIYIYGLIPLIKVMQVLSYSKLLSRFNNFQKNNCNLLIRNT 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 17420568 17425541 - MC09g_new0362 Mch9g1505 698387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g1505 666 SUPERFAMILY DNA/RNA polymerases 136 573 IPR043502 -
Mch9g1505 666 CDD RNase_HI_RT_Ty1 467 602 - -
Mch9g1505 666 PANTHER INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 322 607 IPR052510 -
Mch9g1505 666 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 136 382 IPR013103 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0897 Mch-Chr10:6342047 Mch9g1505 Mch-Chr9:17420568 8.85E-28 dispersed
Mch10g1214 Mch-Chr10:9707660 Mch9g1505 Mch-Chr9:17420568 3.76E-96 dispersed
Mch11g1798 Mch-Chr11:17461651 Mch9g1505 Mch-Chr9:17420568 9.32E-17 dispersed
Mch2g1093 Mch-Chr2:7387860 Mch9g1505 Mch-Chr9:17420568 1.84E-109 dispersed
Mch2g1505 Mch-Chr2:11464598 Mch9g1505 Mch-Chr9:17420568 9.97E-85 dispersed
Mch4g0041 Mch-Chr4:282173 Mch9g1505 Mch-Chr9:17420568 4.77E-10 dispersed
Mch4g1230 Mch-Chr4:13967498 Mch9g1505 Mch-Chr9:17420568 4.60E-09 dispersed
Mch4g1423 Mch-Chr4:17700047 Mch9g1505 Mch-Chr9:17420568 3.47E-46 dispersed
Mch6g1776 Mch-Chr6:20327376 Mch9g1505 Mch-Chr9:17420568 5.23E-39 dispersed
Mch6g1780 Mch-Chr6:20353222 Mch9g1505 Mch-Chr9:17420568 3.48E-55 dispersed
Mch7g0180 Mch-Chr7:2268920 Mch9g1505 Mch-Chr9:17420568 9.10E-52 dispersed
Mch8g1880 Mch-Chr8:19799279 Mch9g1505 Mch-Chr9:17420568 2.99E-60 dispersed
Mch9g1081 Mch-Chr9:10308603 Mch9g1505 Mch-Chr9:17420568 8.55E-85 dispersed
Mch9g1144 Mch-Chr9:11911746 Mch9g1505 Mch-Chr9:17420568 7.66E-33 dispersed
Mch9g1505 Mch-Chr9:17420568 Mch9g1582 Mch-Chr9:18058269 7.67E-85 dispersed
Mch9g1505 Mch-Chr9:17420568 Mch1g1404 Mch-Chr1:15891625 2.28E-142 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g1505 - - - 0.0