Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g1539 GATGAGGAGAACAACTCTGGCAGCCATGAGAGGGGCGAACCAGGCTCCAGCTCCAGCACGCGCCGCCCACGTGGCCGTCCGCCGGGATCCAAGAACAAGCCCAAACCGCCGGTGGTGGTCACGAAGGAGAGTCCCGATGCCCTCCGGAGCCACGTCTTGGAGATCGCCAGCGGCAGCGATATCGTCGACAGCATCTCTAGTTTCGCCCAGCGCCGCCAGCGTGGGGTTTCCGTCCTCGCCGGAAGTGGGCTTGTCGCCAATGTCACTCTCCGACACCCGGCGGCGCCTGGCGGCGTTATTACGCTGCCGGGACAGTTTGATGTTTTGTCTCTCTCTGGTGCGTTTCTGCCGGCGCCTGCTCCGTCGGGGGCCACTGGGTTGACGATCTACTTGGCCGGCGGGCAAGGGCAGGTCGTCGGTGGCATTGTAGTCGGTGCACTCGTCGCGGCGGGTCCGGTTATTGTCATGGCCGCTACGTTTACAAATGCTACATTCGAGCGGCTGCCACTTGAGGATGAGGATGCGGCCGCCGGCGACAAGTCTGGAACTAGCCAGAACTCCACGTCTCAGAGCATGGGGGAGCAGCCGCCGCCGCCGCCGATGGCGGTTTACAATGTGCCTCCGAATTTGGTGCCAAATGGT 642 63.4 DEENNSGSHERGEPGSSSSTRRPRGRPPGSKNKPKPPVVVTKESPDALRSHVLEIASGSDIVDSISSFAQRRQRGVSVLAGSGLVANVTLRHPAAPGGVITLPGQFDVLSLSGAFLPAPAPSGATGLTIYLAGGQGQVVGGIVVGALVAAGPVIVMAATFTNATFERLPLEDEDAAAGDKSGTSQNSTSQSMGEQPPPPPMAVYNVPPNLVPNG 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 17699058 17699699 + MC09g1163 Mch9g1539 698421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g1539 214 PIRSF ESCAROLA 1 211 IPR014476 GO:0003680(InterPro)
Mch9g1539 214 SUPERFAMILY AF0104/ALDC/Ptd012-like 46 175 - -
Mch9g1539 214 MobiDBLite consensus disorder prediction 172 214 - -
Mch9g1539 214 FunFam AT-hook motif nuclear-localized protein 48 175 - -
Mch9g1539 214 Pfam Plants and Prokaryotes Conserved (PCC) domain 49 161 IPR005175 -
Mch9g1539 214 Gene3D - 48 177 - -
Mch9g1539 214 MobiDBLite consensus disorder prediction 10 25 - -
Mch9g1539 214 MobiDBLite consensus disorder prediction 1 45 - -
Mch9g1539 214 CDD DUF296 49 132 IPR005175 -
Mch9g1539 214 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 6 210 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Mch9g1539 214 ProSiteProfiles PPC domain profile profile. 45 185 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g1244 Mch-Chr6:9789390 Mch9g1539 Mch-Chr9:17699058 9.26E-42 dispersed
Mch7g0992 Mch-Chr7:14151062 Mch9g1539 Mch-Chr9:17699058 6.95E-73 dispersed
Mch8g2974 Mch-Chr8:32422099 Mch9g1539 Mch-Chr9:17699058 7.23E-83 dispersed
Mch4g2556 Mch-Chr4:26074598 Mch9g1539 Mch-Chr9:17699058 8.31E-71 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g1539 - - - 0.0