Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g1540 ATGACAGGGTTTGCCTACTCTTCTTCTTCTTTTTCTTCTTGTGGTGCCTGCAAATTTCTAAGGCGAAAATGCAGTGATCAATGTGTTTTTGCTCCTTTCTTCAGCTATGAAGAAGCCACTTCCCATTTTGCAGCTGTTCACAAAGTGTTTGGTGCAAGTAATGTTTCGAAGCTTCTCTTACACCTCCCTGTGCACAATCGAAGCCACGCTGCCATTACTGTTGCTTATGAAGCTCTTGAGCGAATGCGAGATCCCACCTATGGCTGCATTGCTCACATCTTCGCATTGCAGCAAGAGGTTGCAAGCTTGCAAGAGGAGATAGAAATTCTCGGGAGCCAAATAGCCAACTTCACCACTGCAACCGACACCGTTGCAACGACCGAGAATCCGTTTATAGAGCTCCAAGTCTCGCAGCAGCTGAGTGATTTTGTGATGAACACAGATGATTATCAAAATCATCTATTTTCTCAACTGCCTCACCAAACTTTTGATCATCGTGGCCAAAACGATGCTCAGATGATATCTCCATTGTGTTGCTTAGGGGAAGAAAATGGGTATTTTGGGTGTAACCCAAATGCTATGGAGAACTTTGCTTCTTATCCATGG 606 44.39 MTGFAYSSSSFSSCGACKFLRRKCSDQCVFAPFFSYEEATSHFAAVHKVFGASNVSKLLLHLPVHNRSHAAITVAYEALERMRDPTYGCIAHIFALQQEVASLQEEIEILGSQIANFTTATDTVATTENPFIELQVSQQLSDFVMNTDDYQNHLFSQLPHQTFDHRGQNDAQMISPLCCLGEENGYFGCNPNAMENFASYPW 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 17704009 17705300 - MC09g1164 Mch9g1540 698422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g1540 202 ProSiteProfiles LOB domain profile. 12 114 IPR004883 -
Mch9g1540 202 Coils Coil 93 113 - -
Mch9g1540 202 Pfam Lateral organ boundaries (LOB) domain 13 109 IPR004883 -
Mch9g1540 202 PANTHER LOB DOMAIN CONTAINING PROTEIN 11 146 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch9g0985 Mch-Chr9:8297890 Mch9g1540 Mch-Chr9:17704009 4.08E-43 dispersed
Mch9g1540 Mch-Chr9:17704009 Mch7g0754 Mch-Chr7:12166732 1.30E-44 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44069 PF03195 LOB 1.40E-33 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g1540 K13945 - csv:101204875 278.87