Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g1554 ATGGCCGCCATTACGGTTACTCTCCTCTCCATTCTCCTCTCAATGCTTGCTGTCGACGCTAGAATCCCCGGAGTTTACTCCGGCGGCCAGTGGCAGAGTGCTCACGCTACTTTCTACGGCGGAAGCGACGCCTCCGGAACCATGGGAGGTGCTTGCGGTTACGGAAACTTGTACAGCCAAGGGTACGGCGTGAACACGGCGGCGCTGAGCACCGCGTTGTTCAACAACGGTCTAAGCTGCGGAGCTTGCTTCGAGCTGAAGTGCGATAACGATCCGCAGTGGTGCCATCCCGGGAATCCATCAATCTTCATCACCGCCACCAACTTCTGCCCTCCGAACTACGCTATTCCGAGTGACAATGGCGGCTGGTGCAACCCTCCCCGCCCTCACTTCGACCTCGCCATGCCTATGTTCCTCAAGATCGCCGAGTACAGAGCCGGAATCGTCCCCGTCTCTTACCGCAGGGTGCCCTGCCGGAAACAGGGGGGAATCAGATTCACAATCAACGGCTTCCGGTACTTCAATTTGGTTCTGATCACGAACGTGGCCGGCGCCGGGGACATCGTGAAGGTGAGCGTGAAAGGCAGCAACACAGAATGGATGAGCATGAGCCGAAACTGGGGCCAAAACTGGCAATCGAACGCGGTTCTGGTTGGTCAGTCACTGTCGTTCAGAGTGACAGCCAGTGACCGGCGCAGCTCCACTTCGTGGAACATCGTCCCCTCCAATTGGCAGTTCGGCCAGACATTCTCCGGCAAGAACTTCAGGGTCTAG 774 57.75 MAAITVTLLSILLSMLAVDARIPGVYSGGQWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCDNDPQWCHPGNPSIFITATNFCPPNYAIPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKVSVKGSNTEWMSMSRNWGQNWQSNAVLVGQSLSFRVTASDRRSSTSWNIVPSNWQFGQTFSGKNFRV 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 17825037 17826847 + MC09g1175 Mch9g1554 698436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g1554 257 Gene3D - 163 255 IPR036749 -
Mch9g1554 257 SUPERFAMILY PHL pollen allergen 160 251 IPR036749 -
Mch9g1554 257 Pfam Lytic transglycolase 66 153 IPR009009 -
Mch9g1554 257 PRINTS Expansin signature 121 138 IPR002963 GO:0009664(InterPro)
Mch9g1554 257 PRINTS Expansin signature 102 112 IPR002963 GO:0009664(InterPro)
Mch9g1554 257 PRINTS Expansin signature 174 195 IPR002963 GO:0009664(InterPro)
Mch9g1554 257 PRINTS Expansin signature 138 151 IPR002963 GO:0009664(InterPro)
Mch9g1554 257 PRINTS Expansin signature 61 75 IPR002963 GO:0009664(InterPro)
Mch9g1554 257 PRINTS Expansin signature 88 99 IPR002963 GO:0009664(InterPro)
Mch9g1554 257 PRINTS Expansin signature 162 174 IPR002963 GO:0009664(InterPro)
Mch9g1554 257 PRINTS Expansin signature 209 230 IPR002963 GO:0009664(InterPro)
Mch9g1554 257 PRINTS Expansin signature 238 254 IPR002963 GO:0009664(InterPro)
Mch9g1554 257 Pfam Expansin C-terminal domain 164 241 IPR007117 -
Mch9g1554 257 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 163 IPR007112 -
Mch9g1554 257 SMART dpbb_1 66 153 IPR007112 -
Mch9g1554 257 FunFam Expansin 20 159 - -
Mch9g1554 257 Gene3D - 19 159 IPR036908 -
Mch9g1554 257 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576(InterPro)
Mch9g1554 257 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576(InterPro)
Mch9g1554 257 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576(InterPro)
Mch9g1554 257 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576(InterPro)
Mch9g1554 257 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576(InterPro)
Mch9g1554 257 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576(InterPro)
Mch9g1554 257 FunFam Expansin 163 255 - -
Mch9g1554 257 SUPERFAMILY Barwin-like endoglucanases 30 181 IPR036908 -
Mch9g1554 257 CDD DPBB_EXPA_N 30 158 - -
Mch9g1554 257 PANTHER EXPANSIN-A15 7 255 IPR002963 GO:0009664(InterPro)
Mch9g1554 257 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 252 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g0379 Mch-Chr4:2416874 Mch9g1554 Mch-Chr9:17825037 1.45E-92 dispersed
Mch4g2162 Mch-Chr4:23468771 Mch9g1554 Mch-Chr9:17825037 1.16E-160 dispersed
Mch6g2561 Mch-Chr6:27464216 Mch9g1554 Mch-Chr9:17825037 4.70E-91 dispersed
Mch9g1554 Mch-Chr9:17825037 Mch9g2116 Mch-Chr9:22063783 1.34E-130 dispersed
Mch1g0867 Mch-Chr1:12068414 Mch9g1554 Mch-Chr9:17825037 4.16E-100 transposed
Mch8g2415 Mch-Chr8:27193490 Mch9g1554 Mch-Chr9:17825037 2.66E-95 transposed
Mch1g0714 Mch-Chr1:11069378 Mch9g1554 Mch-Chr9:17825037 3.01E-171 wgd
Mch2g0893 Mch-Chr2:6077979 Mch9g1554 Mch-Chr9:17825037 5.00E-172 wgd
Mch3g0241 Mch-Chr3:3356087 Mch9g1554 Mch-Chr9:17825037 3.36E-168 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g1554 - - - 0.0