Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch9g1562 | ATGGTTTTCCCTTCTCTCCCTCTCTATTTGGATCCCCCCAACTGGCAACCCCTCGCGAATCGGCAGTTGGGGGAGAATGATACTGGAGGGGATTCTGATCGGGCTTTGCCACCTTCGTCTTCGTCTGAAGGTGGCGGTGGCGGTGGTGGTGGGGTGGGGTTGGTCAGGCCGGTTTCGATGACGGATCGAGCCCGGCTGGCGAAGATTCCACAGCCAGAGGCCGGCCTGAAATGCCCGAGATGTGAATCTACGAACACCAAGTTTTGTTACTTCAATAACTATAATCTCTCTCAGCCGCGCCACTTTTGCAAGACCTGTCGCCGGTACTGGACACGTGGCGGCGCGCTCAGAAATGTTCCGGTCGGCGGCGGTTGCCGGAGAAATAAGAGAACCAAAGCCCGGAACCGATCGAAGTCTCCGGCTGCCGGATCGGGTAATTCCACCGCCGCGGTTTCACTTTCGGCTCAACCCCATTTGCCCTTTTTGCCCTCTTTGCATAATTTTTCTAATTACGGCCTGAATTTGGGCATAATTCCGCCGCCAGCTCCTCCAACAAGCGGCGGCCCCTCCACCGGAGGAGCTGATGCTCATGAATTTCAAGGTGAACATTGGAGATCAATACAGCAACCACAACAATTTCCTCTCTTAACTAATGAACAACCCAGTTTGATGTACACTTTCGAGCCACCGGAAGGCGCGGCCGCTGCAACTCGGTATAACCTCGGCGGATTTTCGAGATTAGAGCTGGGAAACGACGTCGGGACAACGATGATGACGGTGGGGGCGGTGAAGGTGGAGGAGAGCAAAGGGATGAACTTGGGGAAGAATTTTCAGTTCTGGGCTGGCGGTGGCGGCGACGTCAATGCATGGGGTGGCGGAGGCGGCGGCGATATCCATGGCTTCTCCTCTTCCTCCGCCGGCCACTTCTTGAGA | 933 | 55.95 | MVFPSLPLYLDPPNWQPLANRQLGENDTGGDSDRALPPSSSSEGGGGGGGGVGLVRPVSMTDRARLAKIPQPEAGLKCPRCESTNTKFCYFNNYNLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRTKARNRSKSPAAGSGNSTAAVSLSAQPHLPFLPSLHNFSNYGLNLGIIPPPAPPTSGGPSTGGADAHEFQGEHWRSIQQPQQFPLLTNEQPSLMYTFEPPEGAAAATRYNLGGFSRLELGNDVGTTMMTVGAVKVEESKGMNLGKNFQFWAGGGGDVNAWGGGGGGDIHGFSSSSAGHFLR | 311 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 17923634 | 17925199 | + | MC09g1182 | Mch9g1562 | 698444 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch9g1562 | 311 | MobiDBLite | consensus disorder prediction | 17 | 56 | - | - | |
| Mch9g1562 | 311 | Pfam | Dof domain, zinc finger | 76 | 130 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
| Mch9g1562 | 311 | ProSiteProfiles | Zinc finger Dof-type profile. | 76 | 130 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
| Mch9g1562 | 311 | ProSitePatterns | Zinc finger Dof-type signature. | 78 | 114 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
| Mch9g1562 | 311 | MobiDBLite | consensus disorder prediction | 121 | 149 | - | - | |
| Mch9g1562 | 311 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 64 | 147 | IPR045174 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch1g1845 | Mch-Chr1:18515545 | Mch9g1562 | Mch-Chr9:17923634 | 1.96E-31 | dispersed | |
| Mch8g1246 | Mch-Chr8:8955859 | Mch9g1562 | Mch-Chr9:17923634 | 1.88E-30 | dispersed | |
| Mch9g1562 | Mch-Chr9:17923634 | Mch9g2120 | Mch-Chr9:22085421 | 7.01E-24 | dispersed | |
| Mch1g0729 | Mch-Chr1:11160266 | Mch9g1562 | Mch-Chr9:17923634 | 3.17E-47 | wgd | |
| Mch2g0909 | Mch-Chr2:6180463 | Mch9g1562 | Mch-Chr9:17923634 | 4.52E-52 | wgd | |
| Mch4g2138 | Mch-Chr4:23362067 | Mch9g1562 | Mch-Chr9:17923634 | 1.66E-57 | wgd | |
| Mch5g1836 | Mch-Chr5:18631446 | Mch9g1562 | Mch-Chr9:17923634 | 4.37E-54 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 44070 | PF02701 | zf-Dof | 4.20E-32 | No_clan | Mch | TF |
Pathway information