Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g1562 ATGGTTTTCCCTTCTCTCCCTCTCTATTTGGATCCCCCCAACTGGCAACCCCTCGCGAATCGGCAGTTGGGGGAGAATGATACTGGAGGGGATTCTGATCGGGCTTTGCCACCTTCGTCTTCGTCTGAAGGTGGCGGTGGCGGTGGTGGTGGGGTGGGGTTGGTCAGGCCGGTTTCGATGACGGATCGAGCCCGGCTGGCGAAGATTCCACAGCCAGAGGCCGGCCTGAAATGCCCGAGATGTGAATCTACGAACACCAAGTTTTGTTACTTCAATAACTATAATCTCTCTCAGCCGCGCCACTTTTGCAAGACCTGTCGCCGGTACTGGACACGTGGCGGCGCGCTCAGAAATGTTCCGGTCGGCGGCGGTTGCCGGAGAAATAAGAGAACCAAAGCCCGGAACCGATCGAAGTCTCCGGCTGCCGGATCGGGTAATTCCACCGCCGCGGTTTCACTTTCGGCTCAACCCCATTTGCCCTTTTTGCCCTCTTTGCATAATTTTTCTAATTACGGCCTGAATTTGGGCATAATTCCGCCGCCAGCTCCTCCAACAAGCGGCGGCCCCTCCACCGGAGGAGCTGATGCTCATGAATTTCAAGGTGAACATTGGAGATCAATACAGCAACCACAACAATTTCCTCTCTTAACTAATGAACAACCCAGTTTGATGTACACTTTCGAGCCACCGGAAGGCGCGGCCGCTGCAACTCGGTATAACCTCGGCGGATTTTCGAGATTAGAGCTGGGAAACGACGTCGGGACAACGATGATGACGGTGGGGGCGGTGAAGGTGGAGGAGAGCAAAGGGATGAACTTGGGGAAGAATTTTCAGTTCTGGGCTGGCGGTGGCGGCGACGTCAATGCATGGGGTGGCGGAGGCGGCGGCGATATCCATGGCTTCTCCTCTTCCTCCGCCGGCCACTTCTTGAGA 933 55.95 MVFPSLPLYLDPPNWQPLANRQLGENDTGGDSDRALPPSSSSEGGGGGGGGVGLVRPVSMTDRARLAKIPQPEAGLKCPRCESTNTKFCYFNNYNLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRTKARNRSKSPAAGSGNSTAAVSLSAQPHLPFLPSLHNFSNYGLNLGIIPPPAPPTSGGPSTGGADAHEFQGEHWRSIQQPQQFPLLTNEQPSLMYTFEPPEGAAAATRYNLGGFSRLELGNDVGTTMMTVGAVKVEESKGMNLGKNFQFWAGGGGDVNAWGGGGGGDIHGFSSSSAGHFLR 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 17923634 17925199 + MC09g1182 Mch9g1562 698444

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g1562 311 MobiDBLite consensus disorder prediction 17 56 - -
Mch9g1562 311 Pfam Dof domain, zinc finger 76 130 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Mch9g1562 311 ProSiteProfiles Zinc finger Dof-type profile. 76 130 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Mch9g1562 311 ProSitePatterns Zinc finger Dof-type signature. 78 114 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Mch9g1562 311 MobiDBLite consensus disorder prediction 121 149 - -
Mch9g1562 311 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 64 147 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g1562 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1845 Mch-Chr1:18515545 Mch9g1562 Mch-Chr9:17923634 1.96E-31 dispersed
Mch8g1246 Mch-Chr8:8955859 Mch9g1562 Mch-Chr9:17923634 1.88E-30 dispersed
Mch9g1562 Mch-Chr9:17923634 Mch9g2120 Mch-Chr9:22085421 7.01E-24 dispersed
Mch1g0729 Mch-Chr1:11160266 Mch9g1562 Mch-Chr9:17923634 3.17E-47 wgd
Mch2g0909 Mch-Chr2:6180463 Mch9g1562 Mch-Chr9:17923634 4.52E-52 wgd
Mch4g2138 Mch-Chr4:23362067 Mch9g1562 Mch-Chr9:17923634 1.66E-57 wgd
Mch5g1836 Mch-Chr5:18631446 Mch9g1562 Mch-Chr9:17923634 4.37E-54 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch3g1085 . 12 169 C2C2-Dof Transcription Factor Family AT1G29160 54.1 1.6e-44 176.0
Mch1g1938 . 13 164 C2C2-Dof Transcription Factor Family AT1G29160 52.9 1.3e-41 166.4
Mch3g1085 . 12 169 C2C2-Dof Transcription Factor Family AT2G34140 53.4 2.5e-42 168.7
Mch1g1938 . 13 164 C2C2-Dof Transcription Factor Family AT2G34140 52.4 1.8e-40 162.5
Mch5g1836 . 67 141 C2C2-Dof Transcription Factor Family AT2G37590 90.7 5.5e-38 155.2
Mch4g2138 . 1 131 C2C2-Dof Transcription Factor Family AT2G37590 61.7 7.2e-38 154.8
Mch1g0729 . 1 135 C2C2-Dof Transcription Factor Family AT5G02460 66.2 7.9e-39 158.3
Mch4g2138 . 1 131 C2C2-Dof Transcription Factor Family AT5G02460 66.0 9.6e-37 151.4
Mch2g0909 . 1 124 C2C2-Dof Transcription Factor Family AT5G02460 55.8 1.6e-36 150.6
Mch9g1562 . 59 218 C2C2-Dof Transcription Factor Family AT3G55370 51.3 4.3e-39 159.1
Mch6g0313 . 28 327 C2C2-Dof Transcription Factor Family AT5G60850 51.6 8.7e-46 181.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007574 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44070 PF02701 zf-Dof 4.20E-32 No_clan Mch TF