Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g1563 ATGGCAGATTCTGAGGACATTCAGCCTCTCGTGTGTGATAATGGAACGGGAATGGTTAAGGCTGGGTTTGCTGGAGATGATGCTCCAAGAGCTGTGTTTCCTAGCATTGTAGGCCGTCCTCGCCACACCGGTGTGATGGTGGGCATGGGTCAGAAAGATGCTTATGTTGGTGATGAGGCTCAATCCAAGCGTGGTATTTTGACTCTGAAATATCCAATTGAGCATGGTATTGTAAGCAACTGGGACGATATGGAAAAAATTTGGCATCATACTTTCTATAATGAGCTTCGTGTTGCCCCAGAGGAGCACCCTGTTCTCCTAACTGAGGCTCCTCTTAACCCAAAGGCCAATCGTGAGAAGATGACACAAATCATGTTTGAGACCTTCAATACTCCAGCTATGTATGTTGCCATTCAAGCTGTTCTGTCCTTGTATGCAAGTGGTCGTACAACTGGTATTGTGCTGGACTCTGGTGATGGTGTCAGTCATACTGTTCCTATCTACGAAGGGTATGCGCTCCCACACGCCATCCTTCGTCTCGACCTGGCAGGGCGTGATCTCACAGATAACCTGATGAAAATCCTCACGGAGCGTGGTTATTCTTTCACCACAACTGCTGAGCGTGAAATTGTGAGAGATATGAAAGAAAAGCTGTCATACATTGCCCTCGATTATGAACAGGAGATTGAGACATCCAAGACCAGCTCGTCGGTCGAAAAGAGCTATGAATTGCCTGATGGACAGGTGATCACCATCGGCGCAGAGCGATTCAGATGTCCCGAAGTTCTTTTCCAACCTTCCATGATCGGAATGGAAGCAGCAGGCATTCATGAGACTACATACAACTCCATCATGAAGTGTGATGTAGATATTAGGAAGGACCTGTATGGCAACATTGTCCTATCTGGTGGTTCCACCATGTTCCCCGGCATTGCCGATAGAATGAGCAAGGAGATCTCCGCCCTCGCCCCGAGCAGCATGAAGATAAAGGTCGTGGCGCCACCAGAGCGAAAGTACAGTGTCTGGATTGGAGGATCCATCTTAGCATCCCTTAGCACCTTCCAACAGATGTGGATTGCCAAGGCCGAGTATGACGAATCTGGACCGTCGATCGTTCACAGGAAATGCTTCTAA 1134 48.24 MADSEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLSYIALDYEQEIETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 17932457 17935771 + MC09g1183 Mch9g1563 698445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g1563 377 SMART actin_3 7 377 IPR004000 -
Mch9g1563 377 FunFam Actin, alpha skeletal muscle 3 174 - -
Mch9g1563 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Mch9g1563 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Mch9g1563 377 PRINTS Actin signature 51 62 IPR004000 -
Mch9g1563 377 PRINTS Actin signature 238 254 IPR004000 -
Mch9g1563 377 PRINTS Actin signature 63 85 IPR004000 -
Mch9g1563 377 PRINTS Actin signature 142 161 IPR004000 -
Mch9g1563 377 PRINTS Actin signature 28 37 IPR004000 -
Mch9g1563 377 PRINTS Actin signature 117 130 IPR004000 -
Mch9g1563 377 FunFam Actin, muscle 182 273 - -
Mch9g1563 377 FunFam Actin, alpha skeletal muscle 255 330 - -
Mch9g1563 377 Gene3D - 140 340 - -
Mch9g1563 377 PANTHER ACTIN 8 369 IPR004000 GO:0005737(PANTHER)
Mch9g1563 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Mch9g1563 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Mch9g1563 377 FunFam Actin, alpha skeletal muscle 36 73 - -
Mch9g1563 377 Pfam Actin 5 377 IPR004000 -
Mch9g1563 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Mch9g1563 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Mch9g1563 377 Gene3D - 10 371 - -
Mch9g1563 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Mch9g1563 377 FunFam Actin, alpha skeletal muscle 331 377 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0721 Mch-Chr1:11115765 Mch9g1563 Mch-Chr9:17932457 1.76E-273 dispersed
Mch2g0904 Mch-Chr2:6143104 Mch9g1563 Mch-Chr9:17932457 2.49E-273 dispersed
Mch5g1440 Mch-Chr5:15488245 Mch9g1563 Mch-Chr9:17932457 1.83E-275 dispersed
Mch6g0364 Mch-Chr6:2420660 Mch9g1563 Mch-Chr9:17932457 1.87E-84 dispersed
Mch9g0563 Mch-Chr9:4112201 Mch9g1563 Mch-Chr9:17932457 5.06E-62 dispersed
Mch9g1551 Mch-Chr9:17789228 Mch9g1563 Mch-Chr9:17932457 5.88E-18 dispersed
Mch9g1563 Mch-Chr9:17932457 Mch9g2320 Mch-Chr9:23324132 3.74E-67 dispersed
Mch9g1563 Mch-Chr9:17932457 Mch4g2154 Mch-Chr4:23417767 1.83E-275 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g1563 K10355 - csv:101220611 749.969