Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g1573 ATGTCTTTCCAGCATAAAAGCTTTTGGATACCTAGGGATGCAGGATGTTTAACTGATGGAGAGATGAATTATGATAGCTCCTCTAGAATTGAAACAAAGCGTGGCCATCAATGGTTTATGGATGGCAATGCACAAGAACTATTCAGTAGCAAGAAGCAAGCAATAGAAACTGTAAATTCTAGACCTGTTCCAGGAGTTCCACACATGAATGTTTCTCCCTGGGATAACACTTCGAGTTTTCAGTCAGTTCCTGGGCCATTCACTGATCGCCTCTTTGGCTCAGAGCCTATAAGAACTGTCAACTTGGTTGATAGAGGCATCACTGTTGGAAATGCTAATATGGACATGGGAAGAAAGGAGTTCGAGAATCATTTTGCAAACAACCCATCAGTTGGCTTGTCCATGTCCCAATCCATTGAAGATTCCTCATCATGTCTCAGTTTTGGTGGAATTAGGAAAGTTAAAGTCAATCAAGTCAGGGATCCTGACATTGGCATGTCTGCCTCGTTGGGGCATGCATACAACAGGGGTGATAATGGTACAATTTCGATGGGTACAACATTTAACAAAAATCACGAGAACGCTATATCATTGGGCCAGACTTATAATAGCAGAGATGACAGTACCATCTCAGTTGGCCCTGCATATCACAAGACAGATGACAATTTTATTTCAATGGGTCATACTTTCAGCAAGGGTGATGGAAATTTCATTACAATTGGTCATAACTATAGCAAGGGGGACAGTAGCATCTTATCAATGAGTCAGCCTTTTGACAAGGGGGATGACACTTTTATATCAATGGGTCAGTCTTATGAGAAGGCAGATGGCAATATCATTTCTTTTGGTGCTTCCTACAATAAAGGGCACGAAAATTTTATCTCAATGGGACCAACCTATAGTAAAGGCGGTGATACTTTCATTTCAATGGCTTCCTCCTATAATAAGGGAAATGATGATACCCTTTCAATGGGTCCAACATATGACAAGGTGGACTCTGACATCGTACATGTGGGTCCTAAATATGACAAAGCGGATTCTGGTTCTCTGTCTATGGCTCACAACTACCATAAGGGTGAGAGTAATACTATATCTTTTGGAGGTTTCGATGATGAAAATGCGACAGATAATCCTTCTGGTGGGATCATTAGCAGTTATGACTTGTTAATGGCTAATCAGGCTTCTGCCCAAGCATCAGAAGTATCAACCCTGCGAGATTCAGTTGATCCCAATGCGGAATTAAATGTTAACAATGCCCCAAAACTTGATGCTAAAATTGACACAAGTTCCAAGAATAAAGAGCCAAGGACGACTAAGAAGGTGCCCCCAAATAGCTTCCCTTCAAATGTTAAAAGCTTGCTCTCCACTGGTATGCTTGATGGGGTCCCTGTGAAATATGTTTCTTGGTCAAGAGAGAAAAATCTCAAGGGAATTATAAAAGGGACTGGATATTTGTGCAGCTGTGACAACTGCAAGCAATCTAAGGCTCTCAATGCTTATGAATTTGAGAGGCACGCTGGCTGCAAAACCAAACATCCAAATAATCATATTTATTTCGAGAATGGCAAAACTATCTATGCTGTTGTTCAAGAGCTAAAGAACACCCCTCAGGAGATGCTATTTGATGCAATTCAGAATGTGACTGGCTCTCCCATTAATCAGAAGAATTTTCGTATTTGGAAAGCATCTTATCAAGCTGCCACCCTTGAACTCCAGCGTATTTATGGAAAGGATGAAGTAATTATGCCTTCTTGA 1755 40.97 MSFQHKSFWIPRDAGCLTDGEMNYDSSSRIETKRGHQWFMDGNAQELFSSKKQAIETVNSRPVPGVPHMNVSPWDNTSSFQSVPGPFTDRLFGSEPIRTVNLVDRGITVGNANMDMGRKEFENHFANNPSVGLSMSQSIEDSSSCLSFGGIRKVKVNQVRDPDIGMSASLGHAYNRGDNGTISMGTTFNKNHENAISLGQTYNSRDDSTISVGPAYHKTDDNFISMGHTFSKGDGNFITIGHNYSKGDSSILSMSQPFDKGDDTFISMGQSYEKADGNIISFGASYNKGHENFISMGPTYSKGGDTFISMASSYNKGNDDTLSMGPTYDKVDSDIVHVGPKYDKADSGSLSMAHNYHKGESNTISFGGFDDENATDNPSGGIISSYDLLMANQASAQASEVSTLRDSVDPNAELNVNNAPKLDAKIDTSSKNKEPRTTKKVPPNSFPSNVKSLLSTGMLDGVPVKYVSWSREKNLKGIIKGTGYLCSCDNCKQSKALNAYEFERHAGCKTKHPNNHIYFENGKTIYAVVQELKNTPQEMLFDAIQNVTGSPINQKNFRIWKASYQAATLELQRIYGKDEVIMPS 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 17989029 17997382 - MC09g1192 Mch9g1573 698455

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g1573 584 PANTHER AUTOIMMUNE REGULATOR 6 565 - GO:0000977(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0042393(PANTHER)|GO:0045944(PANTHER)
Mch9g1573 584 MobiDBLite consensus disorder prediction 410 447 - -
Mch9g1573 584 Pfam Tify domain binding domain 477 532 IPR032308 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g1573 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0932 Mch-Chr2:6283546 Mch9g1573 Mch-Chr9:17989029 7.17E-96 wgd
Mch5g1828 Mch-Chr5:18560047 Mch9g1573 Mch-Chr9:17989029 1.73E-39 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch5g1828 . 18 817 PHD Transcription Factor Family AT3G53680 53.2 2.2e-240 828.9
Mch2g0932 . 275 413 PHD Transcription Factor Family AT3G53680 51.8 4.1e-37 153.7
Mch9g1573 . 439 565 PHD Transcription Factor Family AT3G53680 55.1 1.2e-36 152.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003985 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 8 1 0 44