Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g1591 ATGGTGGGCTCTGAGGAGGACTCTGGTACTTCTGGGGCCGCGTTGCAGCTCCCTGGCAGCCAGAAATTGTTCTGGCGTTCGGCTTCATGGTCTGCGTCACGTTCCTCTCTTCACCATCCCGAAGTGAACAAAGAAGGTGGAGACTCCAATGGGAATCTTGCTGATAGTAATGGACCGAGCCGAATTTATCCTGCTCCATTAACCCCGAGATCACAGCAGCATTGCAAAGCAAGGTCGTGTTTGCCTCCTTTACAGCCTTTGTCGATAGCTCGACGAAGCTTAGATGAATGGCCGAAGGCAGGGTCGGATGATATAGGCGAGTGGCCACAACCTCCTACTCCAAGTGGCAGGGGAAATGGCGAGAGGCTGAAACTTGATTTGTCGACAATCCAGAGGAACCCGGATAAAAATTGTGGACTTGTGAAGAGGGATAAGATTGCTTTCTTTGACAAAGAGTGTTCAAAAGTGGCGGAACATGTATATCTTGGTGGAGATGCAGTTGCTCGAGATAGGGATATACTTAAACAGAATAGAATCACTCATGTGTTGAATTGTGTAGGTTTTGTTTGCCCGGAGTACTTCAAGGATGATTTTGTGTACAGAACTTTGTGGTTGCAGGATAGCCCATCTGAGGATATTACTAGTATTCTTTATGATGTTTTTGACTACTTTGAAGATGTTAGAGAACAAAGTGGAAGGGTTTTTGTTCATTGTTGCCAGGGAGTATCTCGGTCAACATCCTTGGTGATTGCGTATCTGATGTGGAGAGAAGGGCAGAGTTTTGATGATGCATTTCAATATGTGAAGGCGGCGAGAGGTATTGCTGACCCGAATATGGGTTTTGCTTGCCAGTTATTACAGTGCCAAAAGAGGGTCCATGCTTTCCCTCTTAGCCCAAGTTCACTGTTGAGGATGTACAGAGTTGCCCCACACTCACCATATGATCCTTTGCACCTAGTCCCGAAAATGTTAAATGATCCTTCACCTTCCGCTCTGGATTCTAGAGGTGCCTTTATCATTCATATACCTTCTGCCATATTTGTTTGGATTGGTAAGAACTGTGAAGCAATCATGGAAAGGGATGCTAGGGGAGCTGTTGTGCAGATTGTTCGGTACGAGAGAGTGCAAGGGCCTATATCTGTAATTAAGGAAGGGGAAGAACCAACAAACTTTTGGGATTCTTTTGCAAACCTGTTGCCTTTAATGGATAAATCTAACAGTAAAATCAATCTTGGGGAATTAAAAGTCAAGCCGTATGCAGGCGAGAGGAAAGTTCATTCCTATGATGTCGACTTTGAAATTTTCCAGAAGGCTATAACTGGTGGTTTTGTTCCTCCATTTCCCTCTCCCGAGAACGAACATGAAACCCATCTTCCTGTTAGAGAAAGCAGTTGGAGTATGCTAAGGCGTAAGTTTGCCAACGGGAATATGAAAGAGTTTGTATCAGCTCCTAGAATATCGCTCTCTAGGGTCTATTCAGACTCATTCATGATGGTGAATTTATCAGCAAAATCTTCATCACCTTCGACGTTTTCTTTGTCTTCATCGTCTTCTTCACCTATCTATCTTTCTCCAGATTCCCTCTCCTCTGATTCAAGTTCAAGTTCAAGTTCAAGTTCCAAGTATTTTTCAGAATCCTCTCTAGATTCTCCATCTGCAGCTTCACCTTCAGTTCCAGTTTCTTCATCTCTGTCTAGTTTTTCTAACATGTCTCTTATCTCATCCAATAGCTCCTTAGAACCGGTGCCCAATGGACCAGAAACTTGTGATGCAGTCCCGTTGGAATCAAGTTCTCAGTCATTCTCATTCCCATCCAAAAAGTTCTCGCCTTCTCTTGCAGAGCGCCGAGGTAGCGCAAAGTCTCTGACATTGCCTACAATGCCAAGTAAAATCAGAGCAACAAATAGTGCCTCAAGGTTTCTTGCCAGTCAAGAAGATGGTAAAAGGAAGAGCAAGATTTCTTGCTCCCTTAATGTATCAATTAATATGAAAAATGGTTCAGAGCCCAAGGATAGGGTTGAAAATGAACAGACAAGTTCCGCTCAAAATTTCAAGAATATTGAAAATGGAATAGTTGCAAGGGTAGGTAGTGTGGCCTCGTGCCAGCAGGAAACTACAGTTGCTGGACAATCTTCTGGTTCATGGAAAAACCATCCCAAACTTTTTGAAGAAGGCGAGGTACCCACAGTGTCAAATGGGAAGCAAGGTGGTGGGCTTTTGCAGGATTTTCAACCTATGGTATACTCTTGGCCGGAGTTAGAAAAGATTGCAGCTTTTGACGCAAGTTACCTCAATTCTAAAGCTGCTGTAGTGATTTTCTCTCCAAGTAGGTCTTTAGGCAAGAAGGATGACATGATGCTGTATATTTGGGTAGGAAGTTCTTTTGGCCATGATTTATCTCAGGTTCGAGTAAAACGAGATAAAGACTTGGTTGGTTTAGAAACGATAGACTGGGTTAAAGTCGGTCAATATGTACTTACCGAAATAGGTCTGCCAGAAAATACAGAAATTAAGGTACTTGGGACCTTATTT 2532 43.44 MVGSEEDSGTSGAALQLPGSQKLFWRSASWSASRSSLHHPEVNKEGGDSNGNLADSNGPSRIYPAPLTPRSQQHCKARSCLPPLQPLSIARRSLDEWPKAGSDDIGEWPQPPTPSGRGNGERLKLDLSTIQRNPDKNCGLVKRDKIAFFDKECSKVAEHVYLGGDAVARDRDILKQNRITHVLNCVGFVCPEYFKDDFVYRTLWLQDSPSEDITSILYDVFDYFEDVREQSGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQYVKAARGIADPNMGFACQLLQCQKRVHAFPLSPSSLLRMYRVAPHSPYDPLHLVPKMLNDPSPSALDSRGAFIIHIPSAIFVWIGKNCEAIMERDARGAVVQIVRYERVQGPISVIKEGEEPTNFWDSFANLLPLMDKSNSKINLGELKVKPYAGERKVHSYDVDFEIFQKAITGGFVPPFPSPENEHETHLPVRESSWSMLRRKFANGNMKEFVSAPRISLSRVYSDSFMMVNLSAKSSSPSTFSLSSSSSSPIYLSPDSLSSDSSSSSSSSSKYFSESSLDSPSAASPSVPVSSSLSSFSNMSLISSNSSLEPVPNGPETCDAVPLESSSQSFSFPSKKFSPSLAERRGSAKSLTLPTMPSKIRATNSASRFLASQEDGKRKSKISCSLNVSINMKNGSEPKDRVENEQTSSAQNFKNIENGIVARVGSVASCQQETTVAGQSSGSWKNHPKLFEEGEVPTVSNGKQGGGLLQDFQPMVYSWPELEKIAAFDASYLNSKAAVVIFSPSRSLGKKDDMMLYIWVGSSFGHDLSQVRVKRDKDLVGLETIDWVKVGQYVLTEIGLPENTEIKVLGTLF 844
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 18102796 18105327 - MC09g1208 Mch9g1591 698473

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g1591 844 CDD DSP 153 287 - -
Mch9g1591 844 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 211 272 IPR000387 GO:0016311(InterPro)
Mch9g1591 844 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 147 293 IPR029021 -
Mch9g1591 844 SMART dsp_5 152 291 IPR020422 GO:0006470(InterPro)
Mch9g1591 844 SMART VILL_6 301 398 IPR007122 GO:0051015(InterPro)
Mch9g1591 844 Gene3D Protein tyrosine phosphatase superfamily 139 294 IPR029021 -
Mch9g1591 844 MobiDBLite consensus disorder prediction 591 607 - -
Mch9g1591 844 Gene3D Severin 303 398 IPR029006 -
Mch9g1591 844 MobiDBLite consensus disorder prediction 575 630 - -
Mch9g1591 844 ProSiteProfiles Dual specificity protein phosphatase domain profile. 152 294 IPR020422 GO:0006470(InterPro)
Mch9g1591 844 PANTHER MKPA PROTEIN 18 839 - -
Mch9g1591 844 Pfam Dual specificity phosphatase, catalytic domain 160 290 IPR000340 GO:0016311(InterPro)
Mch9g1591 844 MobiDBLite consensus disorder prediction 99 119 - -
Mch9g1591 844 SUPERFAMILY Actin depolymerizing proteins 299 400 - -
Mch9g1591 844 ProSitePatterns Tyrosine specific protein phosphatases active site. 236 246 IPR016130 GO:0016311(InterPro)
Mch9g1591 844 MobiDBLite consensus disorder prediction 28 69 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g1591 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch9g1591 Mch-Chr9:18102796 Mch9g2300 Mch-Chr9:23209733 2.72E-176 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch1g1234 . 33 603 Protein tyrosine phosphatase (PTP) family AT3G50110 60.8 1.1e-188 656.8
Mch4g0722 . 48 619 Protein tyrosine phosphatase (PTP) family AT3G50110 58.2 1.5e-180 629.8
Mch8g2431 . 1 398 Protein tyrosine phosphatase (PTP) family AT5G39400 66.7 3.4e-154 541.6
Mch4g2000 . 1 856 Protein tyrosine phosphatase (PTP) family AT3G10550 69.3 0.0e+00 1183.3
Mch4g2000 . 1 856 Protein tyrosine phosphatase (PTP) family AT5G04540 66.5 0.0e+00 1120.5
Mch6g0629 . 1 1248 Protein tyrosine phosphatase (PTP) family AT5G58160 55.5 0.0e+00 1087.8
Mch6g0258 . 3 314 Protein tyrosine phosphatase (PTP) family AT5G58160 55.1 8.4e-95 345.9
Mch11g1552 . 86 376 Protein tyrosine phosphatase (PTP) family AT1G71860 66.2 1.7e-111 399.4
Mch1g0184 . 21 920 Protein tyrosine phosphatase (PTP) family AT5G23720 64.5 0.0e+00 1077.4
Mch4g0086 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 77.5 1.2e-71 266.2
Mch9g1831 . 96 373 Protein tyrosine phosphatase (PTP) family AT3G52180 70.5 5.3e-114 407.5
Mch9g1401 . 20 277 Protein tyrosine phosphatase (PTP) family AT3G10940 66.4 2.7e-102 368.6
Mch8g1510 . 254 702 Protein tyrosine phosphatase (PTP) family AT3G01510 72.2 1.8e-201 698.7
Mch2g0685 . 9 231 Protein tyrosine phosphatase (PTP) family AT2G32960 62.9 9.5e-78 287.0
Mch4g0093 . 10 243 Protein tyrosine phosphatase (PTP) family AT2G32960 59.8 9.8e-75 276.9
Mch8g3193 . 17 264 Protein tyrosine phosphatase (PTP) family AT2G35680 55.8 1.2e-80 297.0
Mch8g3193 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 51.0 8.2e-47 183.7
Mch2g0685 . 43 230 Protein tyrosine phosphatase (PTP) family AT4G03960 68.6 2.1e-72 268.9
Mch4g0093 . 43 242 Protein tyrosine phosphatase (PTP) family AT4G03960 62.5 4.0e-68 254.6
Mch6g1423 . 5 185 Protein tyrosine phosphatase (PTP) family AT4G03960 53.6 4.3e-54 208.0
Mch6g1423 . 7 216 Protein tyrosine phosphatase (PTP) family AT3G02800 67.0 4.0e-79 291.2
Mch2g0685 . 40 224 Protein tyrosine phosphatase (PTP) family AT3G02800 55.1 2.2e-53 205.7
Mch9g1591 . 1 187 Protein tyrosine phosphatase (PTP) family AT3G55270 66.7 1.8e-63 241.1
Mch8g2431 . 1 398 Protein tyrosine phosphatase (PTP) family AT5G39400 66.7 3.4e-154 541.6
Mch4g0722 . 38 619 Protein tyrosine phosphatase (PTP) family AT3G19420 66.1 6.3e-221 763.8
Mch1g1234 . 33 603 Protein tyrosine phosphatase (PTP) family AT3G19420 61.8 1.7e-197 686.0
Mch1g1234 . 33 603 Protein tyrosine phosphatase (PTP) family AT3G50110 60.8 1.1e-188 656.8
Mch4g0722 . 48 619 Protein tyrosine phosphatase (PTP) family AT3G50110 58.2 1.5e-180 629.8
Mch6g0629 . 1 1248 Protein tyrosine phosphatase (PTP) family AT5G58160 55.5 0.0e+00 1087.8
Mch6g0258 . 3 314 Protein tyrosine phosphatase (PTP) family AT5G58160 55.1 8.4e-95 345.9
Mch4g2000 . 1 856 Protein tyrosine phosphatase (PTP) family AT3G10550 69.3 0.0e+00 1183.3
Mch4g2000 . 1 856 Protein tyrosine phosphatase (PTP) family AT5G04540 66.5 0.0e+00 1120.5
Mch10g1638 . 10 319 Protein tyrosine phosphatase (PTP) family AT2G35320 61.9 9.2e-112 400.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004035 1 5 2 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 4 1 44