Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g1604 TTCTCCCACTCTTCTCCCTCCAAAACCCTCCACTCATCTTCTTCTTTTCCCAGCTCCGGCCACCGGACTCCGCCGTCCACCTATGACCCTTCCCTGTCCGCCGCCATGGAAGAAACCATCGTTAACGCCGAACCCATCATCACCAAATGGGACCCCGATTCCTCCGAGTTCAACAGAGTCACCTTCCTCTTCCGCCATGGCAGGGCCGAGTCCGACGAGTTTCTCACCTCCGTCAACAACCTCCGCCGGGCGATGGACTTTTTCATTTCCGAAAATTCTACCTCCGCCGTCCTTATTCTCGCCCAGAAATTGATGCAGGCCGCCATGAGACGCCTCGAGAAGGAGTTTTATTATATTCTGAGTGAGAATCGGCAGCATCTGGACCCGGAATCCGTCTCCAGCCGGTCCTCCGACGGGGAGATCGCCGGGGATTCTGCGACGGAGCTCGACAGGGTCGCGGCGGAGTTGAGATCGATTGCGGATTGTATGATCGGCTCTGGGTATGGGAAAGAGTGTGTGAAGATTTACAAAGTGATCAGAAAATCGATTGTCGATGAAACTCTATACCGTCTTGGAACAGAGCGGTTCAAGGCTTCGCGGATTCAGAGATTGAATTGGGAATCGCTCGAGACCGTGATCAGGAGCTGGATGAATTCCATAAAGGTTGCTGTGAATACTCTGTTTCGTGGGGAGAAAATTCTCTGCGATCATGTTTTTTCAAAATCCGGCAGAATTGGAAAGTCCTGTTTCTGGGAGATCACAAAAGAAGGGGCGATCACTCTGTTTAAATTCCCGGAGTTGATCGCGAAAGGGAAGAAAGATTCAGAGAAGATTTTCTTGTTGATGGAGCTTTACGAGGCGAATTCCGACGTCTTGCCGGAAATCGAGGTCGTATTCGACTCTGTTTCGACGGAAACCATTAAAGCGCAAGCGGAAGCTTCGTTGGTCAAACTCGCGGAGGCAATCCGCGCCATTCTCTCCGATTTCGAATCGACGATCCAGAAGAATTCCTCCAAAACTCCGGCTCCCGGCGGCGGAATCCACCCGCTGACCCGATCGGCGATGAATTACATCTCCTCTCTCGGAGACTACGGCGGGATTCTCTCCGACATCATCACCGAAAACTCTCCGATTCCGAGTTCGTACACGGAGACTCTCGCCGCCGACGACGCGCTGTCGTCGCCGGTGGCGGCGCAACTCGGGTGGCTGATTCTGGTCCTCCTCTGCAAACTCGACACGAAAGCAGAGCTTTACAGAGACGTATCGCTGTCGTACCTGTTCCTCGCGAACAACCTGAATTTCATCGTGAGGACGGTGACGGCGACGAATCTGAAATCCCTCGTCGGCGGCGAGTGGGTGGCGAACCACGCGAGCAAGGTGAAGCTGTACGCGTCGAATTACGAGGCGACGGCGTGGAACAGGGTGGTGGGGACGCTGCCGGAGAGGAGCTCGCCGGAAATGGAGTCGCCGGAGGCGGCGAAGGAGGGGTTGAGGAAATTCAACGCGGCGTTCGAAGAGGCGTACCGGAAACAGACGTCGTGGAGAGTGGAGGAGGGGCGGCTGAGGGACGAGTTGAAGATGTCGATAGCGAAGAAGCTGCTGCCGACATATCGGCAGTTCTACGAGGGGTGCATTGAGATAGTGGGTGGGGAGAGAGATTTTTCGACGAAAGGGTTTGCTGTCAGGTTTACGCCTGACGATTTGGGAAACTACTTGTCGGATTTGTTC 1728 54.51 FSHSSPSKTLHSSSSFPSSGHRTPPSTYDPSLSAAMEETIVNAEPIITKWDPDSSEFNRVTFLFRHGRAESDEFLTSVNNLRRAMDFFISENSTSAVLILAQKLMQAAMRRLEKEFYYILSENRQHLDPESVSSRSSDGEIAGDSATELDRVAAELRSIADCMIGSGYGKECVKIYKVIRKSIVDETLYRLGTERFKASRIQRLNWESLETVIRSWMNSIKVAVNTLFRGEKILCDHVFSKSGRIGKSCFWEITKEGAITLFKFPELIAKGKKDSEKIFLLMELYEANSDVLPEIEVVFDSVSTETIKAQAEASLVKLAEAIRAILSDFESTIQKNSSKTPAPGGGIHPLTRSAMNYISSLGDYGGILSDIITENSPIPSSYTETLAADDALSSPVAAQLGWLILVLLCKLDTKAELYRDVSLSYLFLANNLNFIVRTVTATNLKSLVGGEWVANHASKVKLYASNYEATAWNRVVGTLPERSSPEMESPEAAKEGLRKFNAAFEEAYRKQTSWRVEEGRLRDELKMSIAKKLLPTYRQFYEGCIEIVGGERDFSTKGFAVRFTPDDLGNYLSDLF 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 18202377 18204104 - MC09g1220 Mch9g1604 698486

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g1604 576 Gene3D Exocyst complex component Exo70 53 576 - -
Mch9g1604 576 PANTHER EXOCYST COMPLEX PROTEIN EXO70 31 576 IPR004140 GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Mch9g1604 576 MobiDBLite consensus disorder prediction 1 31 - -
Mch9g1604 576 Pfam Exocyst complex component Exo70 N-terminal 39 122 - -
Mch9g1604 576 SUPERFAMILY Cullin repeat-like 41 576 IPR016159 -
Mch9g1604 576 Pfam Exo70 exocyst complex subunit C-terminal 215 574 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g1604 K07195 - - csv:101221801 875.93
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g1815 Mch-Chr5:18484947 Mch9g1604 Mch-Chr9:18202377 4.65E-172 dispersed
Mch1g0755 Mch-Chr1:11350685 Mch9g1604 Mch-Chr9:18202377 2.54E-95 wgd
Mch5g1814 Mch-Chr5:18477719 Mch9g1604 Mch-Chr9:18202377 1.64E-169 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch9g1872 . 10 654 EXO70 exocyst subunit family AT5G03540 76.5 3.9e-285 977.2
Mch1g0977 . 1 637 EXO70 exocyst subunit family AT5G03540 70.1 8.2e-259 889.8
Mch1g0977 . 1 637 EXO70 exocyst subunit family AT5G52340 77.7 2.8e-288 987.6
Mch9g1872 . 1 654 EXO70 exocyst subunit family AT5G52340 74.0 6.0e-275 943.3
Mch1g0977 . 145 629 EXO70 exocyst subunit family AT5G52350 61.4 1.1e-169 593.6
Mch9g1872 . 147 654 EXO70 exocyst subunit family AT5G52350 59.1 3.2e-166 582.0
Mch3g0050 . 1 623 EXO70 exocyst subunit family AT5G58430 66.9 4.1e-244 840.9
Mch3g0050 . 1 622 EXO70 exocyst subunit family AT1G07000 51.4 1.4e-172 603.2
Mch5g0938 . 54 663 EXO70 exocyst subunit family AT5G13150 53.8 2.6e-180 629.0
Mch4g1670 . 68 671 EXO70 exocyst subunit family AT5G13990 53.6 4.8e-185 644.8
Mch8g1301 . 7 604 EXO70 exocyst subunit family AT1G72470 65.2 2.8e-216 748.4
Mch8g1301 . 4 602 EXO70 exocyst subunit family AT1G54090 62.3 1.2e-211 733.0
Mch8g1301 . 4 603 EXO70 exocyst subunit family AT3G14090 64.1 4.1e-220 761.1
Mch8g2403 . 10 664 EXO70 exocyst subunit family AT3G29400 50.1 3.4e-164 575.5
Mch6g0064 . 13 650 EXO70 exocyst subunit family AT5G50380 62.1 2.4e-229 792.0
Mch3g1347 . 21 659 EXO70 exocyst subunit family AT5G50380 62.6 2.2e-227 785.4
Mch8g0375 . 1 687 EXO70 exocyst subunit family AT4G31540 71.2 5.5e-290 993.4
Mch9g1604 . 34 576 EXO70 exocyst subunit family AT3G55150 50.2 2.3e-149 526.2
Mch5g1815 . 27 639 EXO70 exocyst subunit family AT3G09520 52.9 5.3e-175 611.3
Mch5g1814 . 27 638 EXO70 exocyst subunit family AT3G09520 52.9 7.7e-174 607.4
Mch2g0943 . 7 604 EXO70 exocyst subunit family AT5G59730 50.2 2.2e-160 562.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006856 2 1 1 2 2 1 0 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 36