Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch9g1610 | CTCGCAGCAATTCAGGAAGCTACAGATTATTTTAGTGAAAGTTTAGCCATTGGTGTTGGTGGGTTTGGGAAAGTTTACAAGGGAATGTTGAGGGACAACACGGAAGTGGCAGTGAAACGAGGGGCATCGAAATCTCAGCAGGGTCTTGCTGAGTTCCGAACCGAAATCGAGATGCTATCCCAGTTCCGCCACCGTCATTTGGTGTCTCTGATCGGGTACTGCGACGAGCAAAATGAGATGATCATAATTTACGAATACATGGAAAAAGGGACTCTCAAGGACCATTTGTATGGATCTGAACTTCCAAGTTTATGCTGGAAACAAAGGCTTGAGATTTGCATCGGCTCAGCCAGGGGGCTTCACTATCTTCACACTGGCTCTGCAAAGGCAATCATTCACAGAGACGTCAAAACTGCAAACATTCTTCTAGATCAAAACTACATGGCCAAAGTTGCAGACTTCGGACTCTCGAAGATCGGCCCCGAGTTCGACAAGACCCACGTCAGTACAGCAGTTAAAGGAAGCTTCGGCTATCTTGATCCCGAGTATCTAACAACGCAACAACTGACTGAGAAATCCGACATCTACTCCTTCGGCGTGGTTATGTTCGAAATCCTTTGTGGTAGG | 627 | 46.73 | LAAIQEATDYFSESLAIGVGGFGKVYKGMLRDNTEVAVKRGASKSQQGLAEFRTEIEMLSQFRHRHLVSLIGYCDEQNEMIIIYEYMEKGTLKDHLYGSELPSLCWKQRLEICIGSARGLHYLHTGSAKAIIHRDVKTANILLDQNYMAKVADFGLSKIGPEFDKTHVSTAVKGSFGYLDPEYLTTQQLTEKSDIYSFGVVMFEILCGR | 209 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 18293041 | 18293667 | + | MC09g1224 | Mch9g1610 | 698492 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch9g1610 | 209 | ProSitePatterns | Protein kinases ATP-binding region signature. | 17 | 39 | IPR017441 | GO:0005524(InterPro) | |
| Mch9g1610 | 209 | FunFam | receptor-like protein kinase FERONIA | 1 | 86 | - | - | |
| Mch9g1610 | 209 | SMART | serkin_6 | 11 | 209 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Mch9g1610 | 209 | Gene3D | Phosphorylase Kinase; domain 1 | 1 | 86 | - | - | |
| Mch9g1610 | 209 | FunFam | Os07g0541700 protein | 87 | 175 | - | - | |
| Mch9g1610 | 209 | SUPERFAMILY | Protein kinase-like (PK-like) | 4 | 209 | IPR011009 | - | |
| Mch9g1610 | 209 | Pfam | Protein tyrosine and serine/threonine kinase | 16 | 207 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Mch9g1610 | 209 | PANTHER | OS07G0166700 PROTEIN | 1 | 209 | IPR045272 | GO:0004672(PANTHER)|GO:0004714(InterPro)|GO:0005886(PANTHER)|GO:0006468(InterPro)|GO:0009506(PANTHER)|GO:0046777(PANTHER) | |
| Mch9g1610 | 209 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 131 | 143 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Mch9g1610 | 209 | ProSiteProfiles | Protein kinase domain profile. | 11 | 209 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Mch9g1610 | 209 | Gene3D | Transferase(Phosphotransferase) domain 1 | 87 | 209 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch8g2954 | Mch-Chr8:32248067 | Mch9g1610 | Mch-Chr9:18293041 | 2.06E-92 | dispersed | |
| Mch9g0371 | Mch-Chr9:2752302 | Mch9g1610 | Mch-Chr9:18293041 | 1.11E-96 | dispersed | |
| Mch9g1610 | Mch-Chr9:18293041 | Mch1g1246 | Mch-Chr1:14737877 | 1.06E-70 | dispersed | |
| Mch9g1610 | Mch-Chr9:18293041 | Mch10g0132 | Mch-Chr10:776863 | 4.02E-108 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 77703 | PF07714 | PK_Tyr_Ser-Thr | 1.70E-49 | CL0016 | Mch | PK |
Pathway information