Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g1618 ATGGTATCCGAAACATTGATGAAGATTGTGTCACCCTGCTGGAAACCGTCTGTTGAAGGTGAACATTCTAGCAGGGGTGGGGATGCAAGTGGTCGGGTTGATGGGCTGTTGTGGTACAAGGATTCTGGACGCCATATCAATGGCGAATTCTCGATGGCAGTTATTCAGGCAAATAATTTGTTGGAAGATCGCAGCCAACTCGAGTCGGGGCCATTGAGTTCATTTGAATTGGGTCCTCATGGAACTTTTGTTGGAATCTATGATGGCCATGGAGGTCCGGAAGCTGCAGAATTCATAAATGATCGTCTGTTCAATAATATGAAGACTTTTCATGGTGCAGAATTTATTCCAGAAAACCAGGGGGGAGTATCAGCTGAAATTATCAACAAAGCATTCTTGGAGACAGAGGAGGAATTCTTGTCTCTTGTAAAGAAACAATGGCTGATTAAGCCGCAAATTGCTTCGGTTGGTTCATGCTGTTTGGTAGGCATAATATGTTGTGGATTGCTGTATATTGCAAACGCTGGGGATTCTAGGGTGGTGTTGGGAAGATTTGAAAAAACGCTTAAAGAGGTTAAAGCTATCCAATTGTCATCTGAGCACAACGCAAGTATTGAATCTGTGAGGGAGGAGTTGCATTCATTGCATCCCAATGATCCGCAGATCGTGGTGTTAAAGCACAAGGTGTGGCGCGTAAAGGGTGTGATACAGGTCTCAAGATCCCTTGGTGATGCTTATCTGAAGAAAACAGAGTTCAACCGAGAGCCACTTTTGCCGAAGTTCAGGTTGCCTGAACCATTCCACAAGCCAATTCTTAAAGCCGAGCCTGCTATCGTAGTGCAGAAACTGTATCCAGAGGATCAGTTTCTTATATTTGCTTCAGATGGCCTTTGGGAATATATAAGCAATCAGGAAGCTGTCGACATCGTCAATAGTTGTCCACGTAATGGGATTGCAAGGAAACTTGTTAAAGCTGCTCTTCATGAAGCTGCAAAAAAGAGAGAAATGAGATACGCGGACTTGAAGAAGATCGACCGTGGGGTGAGAAGACATTTTCACGACGACATCACTGTTATAGTTTTGTTCCTCGATTCCCATCTGATTAGCCGCAGTCCGAGCTACGGACCGATGCTATCAATCAGAGGAGGTGCTGGTATCCTCACTAAATCATCATAG 1176 44.47 MVSETLMKIVSPCWKPSVEGEHSSRGGDASGRVDGLLWYKDSGRHINGEFSMAVIQANNLLEDRSQLESGPLSSFELGPHGTFVGIYDGHGGPEAAEFINDRLFNNMKTFHGAEFIPENQGGVSAEIINKAFLETEEEFLSLVKKQWLIKPQIASVGSCCLVGIICCGLLYIANAGDSRVVLGRFEKTLKEVKAIQLSSEHNASIESVREELHSLHPNDPQIVVLKHKVWRVKGVIQVSRSLGDAYLKKTEFNREPLLPKFRLPEPFHKPILKAEPAIVVQKLYPEDQFLIFASDGLWEYISNQEAVDIVNSCPRNGIARKLVKAALHEAAKKREMRYADLKKIDRGVRRHFHDDITVIVLFLDSHLISRSPSYGPMLSIRGGAGILTKSS 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 18342636 18347871 + MC09g_new0389 Mch9g1618 698500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g1618 391 FunFam Phosphatase 2C family protein 38 373 - -
Mch9g1618 391 SMART PP2C_4 41 361 IPR001932 -
Mch9g1618 391 Pfam Protein phosphatase 2C 76 332 IPR001932 -
Mch9g1618 391 CDD PP2Cc 50 363 IPR001932 -
Mch9g1618 391 ProSitePatterns PPM-type phosphatase domain signature. 83 91 IPR000222 GO:0043169(InterPro)
Mch9g1618 391 Gene3D - 39 371 IPR036457 -
Mch9g1618 391 SUPERFAMILY PP2C-like 77 364 IPR036457 -
Mch9g1618 391 ProSiteProfiles PPM-type phosphatase domain profile. 49 363 IPR001932 -
Mch9g1618 391 PANTHER PROTEIN PHOSPHATASE 42 362 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0384 Mch-Chr2:2843424 Mch9g1618 Mch-Chr9:18342636 1.73E-175 dispersed
Mch7g1243 Mch-Chr7:15956850 Mch9g1618 Mch-Chr9:18342636 4.39E-134 dispersed
Mch9g1452 Mch-Chr9:16876043 Mch9g1618 Mch-Chr9:18342636 1.59E-20 dispersed
Mch9g1618 Mch-Chr9:18342636 Mch5g1306 Mch-Chr5:13906182 3.51E-16 dispersed
Mch5g1801 Mch-Chr5:18398076 Mch9g1618 Mch-Chr9:18342636 3.42E-185 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g1618 K01102 - csv:101220760 733.021