Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g1629 ATGTTGGATCTTAACGATTCGATTATTAGCTGCGAAGAAACGGCGAATCGGATTGTAATGGAAGATTCGGAGACTTCGAATTCCTCCGTGGTTAATGCCGACGAGGCCTGCAACAGCAGAGAAGAGGACTCCTCTGTTTTAATCTTCGATATTCTCAAGAGGGAAAATTCCGGCGCCGGCCGTGGTGGGGGCGGCGGCGCGTCGCCGGAATTGGTCACCAGAGCGCTTTTCCCCGTCGCCGGAGGGTGTGGGGACTCGCTGCCGAGGACCCATTGGTTGAACCTGTATTCGACGGCGGAATCCGGCGGCGGCGACGGCCAGACGGAGCTGAAAGTTGTGCAGCAGAAGCAGCAGCAGGTGCGGAAGAGCCGCCGTGGGCCGCGGTCCCGGAGCTCGCAGTACCGGGGAGTCACGTTTTACCGGCGAACGGGAAGATGGGAATCTCATATTTGGGACTGCGGGAAACAAGTTTATTTAGGTGGGTTCGACACGGCTCATGCTGCAGCAAGAGCTTATGATCGAGCGGCGATAAAATTCCGAGGAGTGGACGCAGATATAAACTTCAACATCACTGATTATGATGAAGATATGAAACAGATGAAGAAGCTGAGTAAAGAGGAATTTGTTCATGTTCTTCGACGGCAGAGCACTGGATTTTCTCGTGGAGGATCGCAGCTGAGAGGATTATCTCTACAAAAATATGGAAGATGGGAAGCTCAGATGGGCCAAATCATTGGGAAGAGTGGAGTTGAGCAAAAGACTTGTAAGGGGGAGACGATGGTGGAGGCAAGCAATGGAGGAAATGGGCATAATCTTGATCTAAGCATTGGGGGAATTTTCAACTACCATTTTAGCAATTCTTCCCAGAAGCTCAATATTGAGAGACCAAAGAATGAAAATAATTGTGTGGCTGGAGGACAACCTCATGTTCCTCCTTCTGTCTGGTCTGGCTTTTACTCTGGTTTTTCACCAGATGATGAGGAACGAGGGAGAGAGAAGAGAAACAACGGAGACTCGACAAAGATCCCCACAAGTTGGGGATGGCAGATGTCGATGCCAATGCCAATGCAAATACAAGGGAATATGAGTAGTAATGGAATAATAGGTAGAGAAGAAGCTCATGTTCTTCCCAAGAGTGCAGCATCATCAGGATTCTCTTCCTCTTCTAATTTTGGTTCACTTTATGCCCAAAACAACACCACCAATATTTCTTAA 1215 49.05 MLDLNDSIISCEETANRIVMEDSETSNSSVVNADEACNSREEDSSVLIFDILKRENSGAGRGGGGGASPELVTRALFPVAGGCGDSLPRTHWLNLYSTAESGGGDGQTELKVVQQKQQQVRKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNITDYDEDMKQMKKLSKEEFVHVLRRQSTGFSRGGSQLRGLSLQKYGRWEAQMGQIIGKSGVEQKTCKGETMVEASNGGNGHNLDLSIGGIFNYHFSNSSQKLNIERPKNENNCVAGGQPHVPPSVWSGFYSGFSPDDEERGREKRNNGDSTKIPTSWGWQMSMPMPMQIQGNMSSNGIIGREEAHVLPKSAASSGFSSSSNFGSLYAQNNTTNIS 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 18450309 18454857 + MC09g1236 Mch9g1629 698511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g1629 404 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 25 255 - -
Mch9g1629 404 Pfam AP2 domain 133 181 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch9g1629 404 Gene3D AP2/ERF domain 132 191 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch9g1629 404 MobiDBLite consensus disorder prediction 314 348 - -
Mch9g1629 404 CDD AP2 133 191 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch9g1629 404 SMART rav1_2 133 195 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch9g1629 404 FunFam AP2-like ethylene-responsive transcription factor 132 191 - -
Mch9g1629 404 MobiDBLite consensus disorder prediction 324 338 - -
Mch9g1629 404 SUPERFAMILY DNA-binding domain 132 190 IPR016177 GO:0003677(InterPro)
Mch9g1629 404 ProSiteProfiles AP2/ERF domain profile. 133 189 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0969 Mch-Chr2:6542028 Mch9g1629 Mch-Chr9:18450309 7.24E-90 dispersed
Mch9g1629 Mch-Chr9:18450309 Mch9g1891 Mch-Chr9:20537313 4.72E-25 dispersed
Mch1g0783 Mch-Chr1:11506599 Mch9g1629 Mch-Chr9:18450309 2.60E-70 wgd
Mch5g1789 Mch-Chr5:18324343 Mch9g1629 Mch-Chr9:18450309 2.14E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44073 PF00847 AP2 5.40E-10 CL0081 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g1629 K09284 - csv:101204131 589.341