Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g1660 ATGTCAAATTCCGAAACTCCCAATAACGGCGTCTCCCAAAAGCCGCCGCCCTCTGCAACCAACGGAGCTCTCGCCGTCAAGAAGCCGCCGTCCAAGGACCGCCACAGCAAGGTTGACGGCCGTGGCCGCCGCATCCGTATGCCCATCATCTGCGCCGCCCGTGTTTTCCAGCTCACCCGCGAACTCGGCCTCAAATCCGACGGCCAGACCATCGAGTGGCTCCTCCGCCACGCCGAGCCCTCCATTATCGCCGCCACCGGCACTGGCACCACCCCGGCTAACTTCTCCTCCGTCGCCGTCTCCGTCAGGGGAAACAACGCCGGCTCCACTTCCCTCTCTTCCCCTTCTTCCACTACCTCCACGCTCTCCCTCTCCCGCCCCCAGCCTCTCTCCGGCCCCGCGCCGTTTATTCTCGGGAAGCGCGTCCGGTCCGACGATGACGCCGGCGGCGCCAAGGATGACGGGTTGGGCGTGGGTCCGACGGTTGGGTCCTTAGTGGGTCAGACGGGGCCGGGTGGGTACTGGGCGATTCCGGCAAGGCCGGACTACGGCCAGGTGTGGAGTTTCGCGGCGGCGGCGGCGGCTCCGTCGGAGATGGTGGTTCAACCGGGGGCGATTTCGCAGCAAGCGTCGTTGTTTTCTCAACAGCAGCAGCCGATTAGAGAGGCGTCGGCGGCGAGGGTGGGGAATTACCTTCCCGGACATCTGAATTTGCTGGCTTCTTTGTCCGGCGGAAGCTCCGGCCGGCGGGAAGATGACCCTCGCTAA 768 65.23 MSNSETPNNGVSQKPPPSATNGALAVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGLKSDGQTIEWLLRHAEPSIIAATGTGTTPANFSSVAVSVRGNNAGSTSLSSPSSTTSTLSLSRPQPLSGPAPFILGKRVRSDDDAGGAKDDGLGVGPTVGSLVGQTGPGGYWAIPARPDYGQVWSFAAAAAAPSEMVVQPGAISQQASLFSQQQQPIREASAARVGNYLPGHLNLLASLSGGSSGRREDDPR 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 18669790 18672139 + MC09g_new0409 Mch9g1660 698542

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g1660 255 MobiDBLite consensus disorder prediction 1 42 - -
Mch9g1660 255 MobiDBLite consensus disorder prediction 105 128 - -
Mch9g1660 255 ProSiteProfiles TCP domain profile. 31 85 IPR017887 -
Mch9g1660 255 MobiDBLite consensus disorder prediction 105 163 - -
Mch9g1660 255 MobiDBLite consensus disorder prediction 28 42 - -
Mch9g1660 255 Pfam TCP family transcription factor 31 111 IPR017887 -
Mch9g1660 255 MobiDBLite consensus disorder prediction 1 19 - -
Mch9g1660 255 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 9 152 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0042752(PANTHER)|GO:0043565(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g1660 K16221 - - csv:101206050 346.665
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch9g1660 Mch-Chr9:18669790 Mch9g2143 Mch-Chr9:22181244 2.28E-32 dispersed
Mch4g1635 Mch-Chr4:19547238 Mch9g1660 Mch-Chr9:18669790 8.79E-103 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch9g1660 . 29 256 TCP Transcription Factor Family AT5G23280 60.7 2.2e-63 239.2
Mch4g1635 . 31 251 TCP Transcription Factor Family AT5G23280 61.5 4.2e-62 235.0
Mch9g2143 . 48 152 TCP Transcription Factor Family AT3G47620 86.0 4.9e-43 172.6
Mch3g1754 . 27 135 TCP Transcription Factor Family AT3G47620 77.1 3.3e-39 159.8
Mch9g2397 . 144 226 TCP Transcription Factor Family AT3G47620 90.4 1.2e-36 151.4
Mch9g2397 . 144 236 TCP Transcription Factor Family AT1G69690 82.8 1.3e-36 150.6
Mch8g1386 . 17 280 TCP Transcription Factor Family AT3G27010 54.9 2.3e-54 209.5
Mch9g1660 . 25 253 TCP Transcription Factor Family AT5G08330 57.3 4.1e-59 224.9
Mch4g1635 . 27 251 TCP Transcription Factor Family AT5G08330 62.9 1.6e-58 223.0
Mch8g2352 . 35 148 TCP Transcription Factor Family AT3G02150 70.0 7.7e-38 154.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001822 4 2 1 2 2 2 4 2 2 1 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 3 2 1 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44076 PF03634 TCP 2.90E-30 No_clan Mch TF