Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g1703 ATGAGGAAGAAGCTCGATACCCGCTTTCCTGCTGCTCGAATTAAAAAGATAATGCAAGCAGATGAAGATGTTGGAAAGATAGCATTGGCAGTGCCCGTTTTAGTTTCTAAAGCATTGGAACTATTCCTGCAAGACCTCTGTGATCGTACATATGAGATTACTCTACAAAGGGGAGCAAAGACAATGAATTCATTGCACCTAAAGCACTGTGTACAAAGCTATAGTGTTTTTGATTTTCTGAGGGATATCGTTAGTCGGGTTCCGGATTATGGTCATGGTCATTCTGATGGTGCTGTTGATGATAGAAAGAGGAGGAAACCTCTTGGTGATGAGGGCAATGATTTTGATGAGTTGAAGAAGAGCAAGATGCATGACATGAGCCACAGCAGCGGCGGTAGAGGAAGAGGAAGAGGACGAGGACGGGGTCGTGGACGGCCTGCTCGGTCAGCCGAAAGAGACAACTTCCAAACTAACCCTGACGCCGACCCTTGCTCGTCTATAGAGAACAGGAACAAGAACCACCCCAACCCAGATGTGCACATGGATCATCACGTCGAGCCGAGCGAAACATCAAAAGAAGTTGGCGAAGCCAACCAACCTGTCCAAAGTTTTGATCTCAATGCCGACGTCATCGCCAACGGAGACTCCAAGACCGTTGTTGCAGCAGCAGCAGTATCAGACACGCCCGTCGAATCAGCCGGGCCTACTATCACCGAGTCTGAGACTAAAGCCGCGGACGAGTTCGTGGACAAAATGGCAATCGACCCTCTCCAATATGCACATCTGAGCAGCACAAGGGTGGAGGAAGAAGAGGAAGATTATGATGAAGAGGAGTGA 837 48.51 MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYSVFDFLRDIVSRVPDYGHGHSDGAVDDRKRRKPLGDEGNDFDELKKSKMHDMSHSSGGRGRGRGRGRGRGRPARSAERDNFQTNPDADPCSSIENRNKNHPNPDVHMDHHVEPSETSKEVGEANQPVQSFDLNADVIANGDSKTVVAAAAVSDTPVESAGPTITESETKAADEFVDKMAIDPLQYAHLSSTRVEEEEEDYDEEE 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 18990512 18995689 + MC09g1292 Mch9g1703 698585

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g1703 278 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 4 174 IPR050568 GO:0001046(PANTHER)|GO:0005634(PANTHER)|GO:0016251(PANTHER)
Mch9g1703 278 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982(InterPro)
Mch9g1703 278 SUPERFAMILY Histone-fold 4 89 IPR009072 GO:0046982(InterPro)
Mch9g1703 278 MobiDBLite consensus disorder prediction 173 191 - -
Mch9g1703 278 MobiDBLite consensus disorder prediction 90 197 - -
Mch9g1703 278 FunFam dr1-associated corepressor homolog 1 86 - -
Mch9g1703 278 MobiDBLite consensus disorder prediction 90 132 - -
Mch9g1703 278 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Mch9g1703 278 MobiDBLite consensus disorder prediction 151 172 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g1703 K21752 - - csv:101209714 436.802
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0209 Mch-Chr2:1572279 Mch9g1703 Mch-Chr9:18990512 5.05E-67 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch6g0056 . 35 219 CCAAT-HAP5 Transcription Factor Family AT3G48590 89.5 8.3e-89 323.6
Mch4g0926 . 82 225 CCAAT-HAP5 Transcription Factor Family AT3G48590 68.1 6.2e-52 201.1
Mch4g0926 . 28 180 CCAAT-HAP5 Transcription Factor Family AT1G08970 69.9 4.1e-48 188.3
Mch6g0056 . 34 133 CCAAT-HAP5 Transcription Factor Family AT1G08970 83.0 6.8e-43 171.0
Mch4g0926 . 28 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.6 4.7e-54 208.0
Mch6g0056 . 34 193 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.3 1.7e-51 199.5
Mch6g0056 . 34 192 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.7 3.4e-38 155.2
Mch6g0056 . 35 219 CCAAT-HAP5 Transcription Factor Family AT5G63470 81.4 6.8e-81 297.4
Mch4g0926 . 82 233 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.9 1.1e-49 193.7
Mch4g0926 . 46 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 81.7 1.6e-64 242.7
Mch6g0056 . 35 158 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 3.8e-50 194.9
Mch9g1703 . 1 277 CCAAT-HAP5 Transcription Factor Family AT3G12480 51.6 4.7e-57 218.4
Mch8g0111 . 3 134 CCAAT-HAP5 Transcription Factor Family AT5G43250 63.2 3.2e-37 151.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008681 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44080 PF00808 CBFD_NFYB_HMF 2.00E-19 CL0012 Mch TF