Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch9g1718 | ATGGAAAACGTGGAGGAAATGAAGCCATTGGCCACAAACAATTGCCATACAGATGGCGGAACAGACACTGTCGAAGTTAAATTCTCAGAATTGTGCCAGGCTGAAGAAGCCGAACGTTTTTGGTCTGCCTTTGTTTTATATTCTGTGAAGAGGCTGAGAGATAAGAATTCAGAGAGTTCTGATCAGGGATCCGAGAATAATAGCTTTACTTTATGCCAGATATTGAGAGTTTGCAAGCTGAACATTGTAGAATTTTTTAAAGAGCTGCCTCAGTTTGTTGTTAAAGCTGGTCCAGTTTTAAGTAATCTCCACGGTGCAGACTGGGAGAATAGACTAGAGGCAAAGGAGTTGCAGGCAAACTTCGTGCATTTGAGCCTCTTAAGCAAGTACTATAAGCGTGTCTACCGAGAATTCTTCTACACCAATGATGCTAATGTTGAAAAGCAGCCAGCTATATCATGCCCTACTGGTTACTTGTCTGATTATCATCGTTTTGGATGGTTGTTATTTTTGGCACTTCGTGTACATGCTTTCAGTCGTTTTAAGGACTTGGTGACTTGCACTAATGGTTTGGTTTCCATTTTGGCTATTTTAATTCTTCACGTTCCCGTTCGTTTCAGAAGCTTCAACATTCTTGACTCTGAACGCTTTGTTAAGAAAGGTGGAAAAGGAGTGGACCTGCTTGGATCACTTTGTAATGTCTATGATACCTCAGAGGAAGAACTGAGGGAGGTAATGGAGAAGACAAACAGTTTGATAGAAGATATTTTGAAGAAGAAGCCACGTTTGGCTTCTGAGTGTAATAGTAAAACCTTGGAGAATATTGACATTGAGGGTTTGATCTACTTTGAAGACTTAATGGAGGAGTCATCTCTTGCATCCAGTTTAGAAATTCTGGAAAAGGACTACGAAGATGCAATTCGTAACAAAGGTGAGCTTGATGAGCGGGTATTTGTTAATGATGAGGACAGTTTACTTGGGTCGGGTAGCTTGTCTGCAGGTGCTGTTACTATGAGTGGCATCAAGAGGAAGTTTGACTCAATGTGCTCGCCTGCAAGGACAATAACAAGTCCAATGTCTCCACTCCGCTCTCCTTCTTCTCATGCCAATGGCACTCTTAATACTGGCAATGCAAAACTTGCTGCCACACCTGTTAGCACAGCCATGACAACGGCAAAGTGGCTTAGAACTGTTATTTCTCCACTCCCCGCAAAACCTTCGGCAGAGATGGAACGCTTTTTGACTTCATGTGATAGAGATGTAACTAATGATGTAGTTCGCAGGGCACATATAATATTAGAGGCTATATTTCCAAATAGTGCTCTAGGAGATCGCTGTATAGCTGGAAATTTACAAAGTGCTAACCTCATGGATAACATCTGGGCAGAACAAAGACGATTAGAAGCACTGAAGTTATATTATAGGGTTCTGGAAGCAATGTGCAGAGCAGAGTCTCAAATGCTTCATGTGACTAATTTGACCTCTTTGCTGACTAATGAGAGGTTCCACAGATGTATGTTGGCTTGTTCTGCCGAATTGGTATTGGCAACACACAAGACTGTTACAATGTTGTTTCCTGCAGTATTGGAGAGAACTGGCATTACAGCTTTTGACCTCAGTAAGGTGATAGAGAGTTTCATTAGGCATGAAGAATCACTTCCTAGAGAATTGAGGCGACATCTTAATTCCTTGGAAGAACGGTTATTAGAGAGCATGGTATGGGAGAAAGGTTCGTCAATGTATAACTCCCTGATTGTTGCTAAACCTACCCTTGCTGCAGAAATAAATCGTCTGAGTTTATTAGCTGAACCCATGCCATCTTTGGATGCAATTGCTGTTCAAATTAACTTTTCTGGTATTGGGGTATCGACCATGCCTAATTTGCAAAAGCATGAGAGTTTACCAGGTCAGAACGGGGACATAAGGTCACCAAAAAGGTTGTGCACAGATTTAAGAAGTGTGCTAGTGGAACGGAATTCCTTTACTTCTCCAGTGAAGGACCGTCTGCTTGCTTTAAGTAGTATTAAGTCTAAGCTTTTGCCACCTCCTTTACAGTCCGCATTTGCAAGTCCAACTCGGCCTAATCCTGGAGGTGGTGGGGAAACGTGTGCTGAAACTGGAATTAACATATTTTTCGGCAAGATCATCAAGTTGGCTGCTGTTAGAGTCAACGGTATGGTGGAAAGGTTGCAGTTATCTCATCATATCAGGGAGAATGTCTACTGTCTTTTCCAACAGATACTCAGTCAAAAGGCATCACTATTATTTAATCGTCACATTGACCAGATCATCCTTTGTTGTTTCTATGGCGTTGCTAAGATATCTCAACTGAGCCTCACTTTCAGGGAAATCATTTACAATTACAGGAAACAACCACAATGTAAACCACAAGTCTTCCGAAATGTGTTTGTCGATTGGTCTTCAGCACGTCGTAACGGGAGATCAGGACAGGATCACGTCGATATAATTACGTTCTACAATGAAATATTTATTCCTTCCGTAAAACCTTTGCTTGTTGAAATTGGCCCGGCTGGATCTATCATGAAAACTGAGCGGGTTCCTCAAGCAAACAACAATAGTGATGCACCATGCCCTGGATCACCCAAGATATCTCCATTTCCAAGTCTTCCTGATATGTCTCCGAAGAAAGTATCTTCAGCACATAATGTCTATGTCTCTCCATTAAGATCATCAAAGATGGATGCGTTGATTTCACACAGTTCTAAAAGCTATTACGCTTGCGTTGGAGAGAGCACTCATGCGTTTCAAAGCCCTTCAAAAGACCTCACTGCCATAAACAACCGCTTGAATGGTACCCGAAAACTTCGAGGCACGCTTAATTTCGACGACGCAGACGTCGGTCTGGTCAGTGATTCTCTGGTGGCCAACAGCCTTTACCCACAAAATGGAAGTTGTGGATCCTCTTCAGGTGCACCTATTAAAACTGAACAGCCTGATTCTTAA | 2964 | 42.14 | MENVEEMKPLATNNCHTDGGTDTVEVKFSELCQAEEAERFWSAFVLYSVKRLRDKNSESSDQGSENNSFTLCQILRVCKLNIVEFFKELPQFVVKAGPVLSNLHGADWENRLEAKELQANFVHLSLLSKYYKRVYREFFYTNDANVEKQPAISCPTGYLSDYHRFGWLLFLALRVHAFSRFKDLVTCTNGLVSILAILILHVPVRFRSFNILDSERFVKKGGKGVDLLGSLCNVYDTSEEELREVMEKTNSLIEDILKKKPRLASECNSKTLENIDIEGLIYFEDLMEESSLASSLEILEKDYEDAIRNKGELDERVFVNDEDSLLGSGSLSAGAVTMSGIKRKFDSMCSPARTITSPMSPLRSPSSHANGTLNTGNAKLAATPVSTAMTTAKWLRTVISPLPAKPSAEMERFLTSCDRDVTNDVVRRAHIILEAIFPNSALGDRCIAGNLQSANLMDNIWAEQRRLEALKLYYRVLEAMCRAESQMLHVTNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLIVAKPTLAAEINRLSLLAEPMPSLDAIAVQINFSGIGVSTMPNLQKHESLPGQNGDIRSPKRLCTDLRSVLVERNSFTSPVKDRLLALSSIKSKLLPPPLQSAFASPTRPNPGGGGETCAETGINIFFGKIIKLAAVRVNGMVERLQLSHHIRENVYCLFQQILSQKASLLFNRHIDQIILCCFYGVAKISQLSLTFREIIYNYRKQPQCKPQVFRNVFVDWSSARRNGRSGQDHVDIITFYNEIFIPSVKPLLVEIGPAGSIMKTERVPQANNNSDAPCPGSPKISPFPSLPDMSPKKVSSAHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAFQSPSKDLTAINNRLNGTRKLRGTLNFDDADVGLVSDSLVANSLYPQNGSCGSSSGAPIKTEQPDS | 987 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 19148799 | 19156467 | + | MC09g1306 | Mch9g1718 | 698600 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch9g1718 | 987 | Gene3D | - | 386 | 574 | - | - | |
Mch9g1718 | 987 | Coils | Coil | 235 | 255 | - | - | |
Mch9g1718 | 987 | Gene3D | - | 162 | 320 | - | - | |
Mch9g1718 | 987 | MobiDBLite | consensus disorder prediction | 968 | 987 | - | - | |
Mch9g1718 | 987 | Coils | Coil | 296 | 316 | - | - | |
Mch9g1718 | 987 | FunFam | Retinoblastoma-related protein 1 | 658 | 868 | - | - | |
Mch9g1718 | 987 | Pfam | Retinoblastoma-associated protein B domain | 708 | 835 | IPR002719 | GO:0005634(InterPro)|GO:0051726(InterPro) | |
Mch9g1718 | 987 | SUPERFAMILY | Cyclin-like | 706 | 875 | IPR036915 | - | |
Mch9g1718 | 987 | SUPERFAMILY | Cyclin-like | 391 | 586 | IPR036915 | - | |
Mch9g1718 | 987 | PANTHER | RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED | 25 | 984 | IPR028309 | GO:0000785(PANTHER)|GO:0000977(PANTHER)|GO:0005667(PANTHER)|GO:0006357(InterPro)|GO:0030154(PANTHER)|GO:0051726(InterPro)|GO:2000134(PANTHER) | |
Mch9g1718 | 987 | CDD | CYCLIN_AtRBR_like | 708 | 839 | - | - | |
Mch9g1718 | 987 | FunFam | Retinoblastoma-related protein 1 | 162 | 320 | - | - | |
Mch9g1718 | 987 | SMART | DUF3452_2 | 52 | 201 | IPR024599 | - | |
Mch9g1718 | 987 | MobiDBLite | consensus disorder prediction | 854 | 878 | - | - | |
Mch9g1718 | 987 | Pfam | Domain of unknown function (DUF3452) | 62 | 201 | IPR024599 | - | |
Mch9g1718 | 987 | SMART | RB_A_2 | 383 | 584 | IPR002720 | GO:0005634(InterPro)|GO:0051726(InterPro) | |
Mch9g1718 | 987 | Pfam | Retinoblastoma-associated protein A domain | 383 | 584 | IPR002720 | GO:0005634(InterPro)|GO:0051726(InterPro) | |
Mch9g1718 | 987 | Gene3D | - | 672 | 875 | - | - | |
Mch9g1718 | 987 | FunFam | Retinoblastoma-related protein 1 | 386 | 574 | - | - |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
44081 | PF01858 | RB_A | 3.00E-64 | CL0065 | Mch | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch9g1718 | K04681 | - | csv:101219810 | 1788.08 |