Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g1718 ATGGAAAACGTGGAGGAAATGAAGCCATTGGCCACAAACAATTGCCATACAGATGGCGGAACAGACACTGTCGAAGTTAAATTCTCAGAATTGTGCCAGGCTGAAGAAGCCGAACGTTTTTGGTCTGCCTTTGTTTTATATTCTGTGAAGAGGCTGAGAGATAAGAATTCAGAGAGTTCTGATCAGGGATCCGAGAATAATAGCTTTACTTTATGCCAGATATTGAGAGTTTGCAAGCTGAACATTGTAGAATTTTTTAAAGAGCTGCCTCAGTTTGTTGTTAAAGCTGGTCCAGTTTTAAGTAATCTCCACGGTGCAGACTGGGAGAATAGACTAGAGGCAAAGGAGTTGCAGGCAAACTTCGTGCATTTGAGCCTCTTAAGCAAGTACTATAAGCGTGTCTACCGAGAATTCTTCTACACCAATGATGCTAATGTTGAAAAGCAGCCAGCTATATCATGCCCTACTGGTTACTTGTCTGATTATCATCGTTTTGGATGGTTGTTATTTTTGGCACTTCGTGTACATGCTTTCAGTCGTTTTAAGGACTTGGTGACTTGCACTAATGGTTTGGTTTCCATTTTGGCTATTTTAATTCTTCACGTTCCCGTTCGTTTCAGAAGCTTCAACATTCTTGACTCTGAACGCTTTGTTAAGAAAGGTGGAAAAGGAGTGGACCTGCTTGGATCACTTTGTAATGTCTATGATACCTCAGAGGAAGAACTGAGGGAGGTAATGGAGAAGACAAACAGTTTGATAGAAGATATTTTGAAGAAGAAGCCACGTTTGGCTTCTGAGTGTAATAGTAAAACCTTGGAGAATATTGACATTGAGGGTTTGATCTACTTTGAAGACTTAATGGAGGAGTCATCTCTTGCATCCAGTTTAGAAATTCTGGAAAAGGACTACGAAGATGCAATTCGTAACAAAGGTGAGCTTGATGAGCGGGTATTTGTTAATGATGAGGACAGTTTACTTGGGTCGGGTAGCTTGTCTGCAGGTGCTGTTACTATGAGTGGCATCAAGAGGAAGTTTGACTCAATGTGCTCGCCTGCAAGGACAATAACAAGTCCAATGTCTCCACTCCGCTCTCCTTCTTCTCATGCCAATGGCACTCTTAATACTGGCAATGCAAAACTTGCTGCCACACCTGTTAGCACAGCCATGACAACGGCAAAGTGGCTTAGAACTGTTATTTCTCCACTCCCCGCAAAACCTTCGGCAGAGATGGAACGCTTTTTGACTTCATGTGATAGAGATGTAACTAATGATGTAGTTCGCAGGGCACATATAATATTAGAGGCTATATTTCCAAATAGTGCTCTAGGAGATCGCTGTATAGCTGGAAATTTACAAAGTGCTAACCTCATGGATAACATCTGGGCAGAACAAAGACGATTAGAAGCACTGAAGTTATATTATAGGGTTCTGGAAGCAATGTGCAGAGCAGAGTCTCAAATGCTTCATGTGACTAATTTGACCTCTTTGCTGACTAATGAGAGGTTCCACAGATGTATGTTGGCTTGTTCTGCCGAATTGGTATTGGCAACACACAAGACTGTTACAATGTTGTTTCCTGCAGTATTGGAGAGAACTGGCATTACAGCTTTTGACCTCAGTAAGGTGATAGAGAGTTTCATTAGGCATGAAGAATCACTTCCTAGAGAATTGAGGCGACATCTTAATTCCTTGGAAGAACGGTTATTAGAGAGCATGGTATGGGAGAAAGGTTCGTCAATGTATAACTCCCTGATTGTTGCTAAACCTACCCTTGCTGCAGAAATAAATCGTCTGAGTTTATTAGCTGAACCCATGCCATCTTTGGATGCAATTGCTGTTCAAATTAACTTTTCTGGTATTGGGGTATCGACCATGCCTAATTTGCAAAAGCATGAGAGTTTACCAGGTCAGAACGGGGACATAAGGTCACCAAAAAGGTTGTGCACAGATTTAAGAAGTGTGCTAGTGGAACGGAATTCCTTTACTTCTCCAGTGAAGGACCGTCTGCTTGCTTTAAGTAGTATTAAGTCTAAGCTTTTGCCACCTCCTTTACAGTCCGCATTTGCAAGTCCAACTCGGCCTAATCCTGGAGGTGGTGGGGAAACGTGTGCTGAAACTGGAATTAACATATTTTTCGGCAAGATCATCAAGTTGGCTGCTGTTAGAGTCAACGGTATGGTGGAAAGGTTGCAGTTATCTCATCATATCAGGGAGAATGTCTACTGTCTTTTCCAACAGATACTCAGTCAAAAGGCATCACTATTATTTAATCGTCACATTGACCAGATCATCCTTTGTTGTTTCTATGGCGTTGCTAAGATATCTCAACTGAGCCTCACTTTCAGGGAAATCATTTACAATTACAGGAAACAACCACAATGTAAACCACAAGTCTTCCGAAATGTGTTTGTCGATTGGTCTTCAGCACGTCGTAACGGGAGATCAGGACAGGATCACGTCGATATAATTACGTTCTACAATGAAATATTTATTCCTTCCGTAAAACCTTTGCTTGTTGAAATTGGCCCGGCTGGATCTATCATGAAAACTGAGCGGGTTCCTCAAGCAAACAACAATAGTGATGCACCATGCCCTGGATCACCCAAGATATCTCCATTTCCAAGTCTTCCTGATATGTCTCCGAAGAAAGTATCTTCAGCACATAATGTCTATGTCTCTCCATTAAGATCATCAAAGATGGATGCGTTGATTTCACACAGTTCTAAAAGCTATTACGCTTGCGTTGGAGAGAGCACTCATGCGTTTCAAAGCCCTTCAAAAGACCTCACTGCCATAAACAACCGCTTGAATGGTACCCGAAAACTTCGAGGCACGCTTAATTTCGACGACGCAGACGTCGGTCTGGTCAGTGATTCTCTGGTGGCCAACAGCCTTTACCCACAAAATGGAAGTTGTGGATCCTCTTCAGGTGCACCTATTAAAACTGAACAGCCTGATTCTTAA 2964 42.14 MENVEEMKPLATNNCHTDGGTDTVEVKFSELCQAEEAERFWSAFVLYSVKRLRDKNSESSDQGSENNSFTLCQILRVCKLNIVEFFKELPQFVVKAGPVLSNLHGADWENRLEAKELQANFVHLSLLSKYYKRVYREFFYTNDANVEKQPAISCPTGYLSDYHRFGWLLFLALRVHAFSRFKDLVTCTNGLVSILAILILHVPVRFRSFNILDSERFVKKGGKGVDLLGSLCNVYDTSEEELREVMEKTNSLIEDILKKKPRLASECNSKTLENIDIEGLIYFEDLMEESSLASSLEILEKDYEDAIRNKGELDERVFVNDEDSLLGSGSLSAGAVTMSGIKRKFDSMCSPARTITSPMSPLRSPSSHANGTLNTGNAKLAATPVSTAMTTAKWLRTVISPLPAKPSAEMERFLTSCDRDVTNDVVRRAHIILEAIFPNSALGDRCIAGNLQSANLMDNIWAEQRRLEALKLYYRVLEAMCRAESQMLHVTNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLIVAKPTLAAEINRLSLLAEPMPSLDAIAVQINFSGIGVSTMPNLQKHESLPGQNGDIRSPKRLCTDLRSVLVERNSFTSPVKDRLLALSSIKSKLLPPPLQSAFASPTRPNPGGGGETCAETGINIFFGKIIKLAAVRVNGMVERLQLSHHIRENVYCLFQQILSQKASLLFNRHIDQIILCCFYGVAKISQLSLTFREIIYNYRKQPQCKPQVFRNVFVDWSSARRNGRSGQDHVDIITFYNEIFIPSVKPLLVEIGPAGSIMKTERVPQANNNSDAPCPGSPKISPFPSLPDMSPKKVSSAHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAFQSPSKDLTAINNRLNGTRKLRGTLNFDDADVGLVSDSLVANSLYPQNGSCGSSSGAPIKTEQPDS 987
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 19148799 19156467 + MC09g1306 Mch9g1718 698600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g1718 987 Gene3D - 386 574 - -
Mch9g1718 987 Coils Coil 235 255 - -
Mch9g1718 987 Gene3D - 162 320 - -
Mch9g1718 987 MobiDBLite consensus disorder prediction 968 987 - -
Mch9g1718 987 Coils Coil 296 316 - -
Mch9g1718 987 FunFam Retinoblastoma-related protein 1 658 868 - -
Mch9g1718 987 Pfam Retinoblastoma-associated protein B domain 708 835 IPR002719 GO:0005634(InterPro)|GO:0051726(InterPro)
Mch9g1718 987 SUPERFAMILY Cyclin-like 706 875 IPR036915 -
Mch9g1718 987 SUPERFAMILY Cyclin-like 391 586 IPR036915 -
Mch9g1718 987 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 25 984 IPR028309 GO:0000785(PANTHER)|GO:0000977(PANTHER)|GO:0005667(PANTHER)|GO:0006357(InterPro)|GO:0030154(PANTHER)|GO:0051726(InterPro)|GO:2000134(PANTHER)
Mch9g1718 987 CDD CYCLIN_AtRBR_like 708 839 - -
Mch9g1718 987 FunFam Retinoblastoma-related protein 1 162 320 - -
Mch9g1718 987 SMART DUF3452_2 52 201 IPR024599 -
Mch9g1718 987 MobiDBLite consensus disorder prediction 854 878 - -
Mch9g1718 987 Pfam Domain of unknown function (DUF3452) 62 201 IPR024599 -
Mch9g1718 987 SMART RB_A_2 383 584 IPR002720 GO:0005634(InterPro)|GO:0051726(InterPro)
Mch9g1718 987 Pfam Retinoblastoma-associated protein A domain 383 584 IPR002720 GO:0005634(InterPro)|GO:0051726(InterPro)
Mch9g1718 987 Gene3D - 672 875 - -
Mch9g1718 987 FunFam Retinoblastoma-related protein 1 386 574 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44081 PF01858 RB_A 3.00E-64 CL0065 Mch TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g1718 K04681 - csv:101219810 1788.08