Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g1741 TCAGGTACCCAGAAAAGGCTGAAGGATCTCACATCTCAGTCTGCCAATAAGTTCTGCGCAGATTGTGGATCTCCAGATCCGAAATGGGTATCTTTGAGTTTTGGGGCATTTATATGCATCAAGTGTTCTGGAGTACACCGAAGCCTTGGAGTGCACATATCTAAGGTTCTTTCAGTGAAGTTAGATGATTGGACAGATGAGCAAGTTGATGCTTTGTCGAGTATAGGTGGAAATACTGCCGTAAACAGAAAGTTAGAAGTTTGCATCCCAGATGGTAATAAAAAACCACAACCAGACTCTTCTATAGAGGAGCGCTTTGACTTTATAAGGAAAAAATATGAGCTGCTACAGTTCTCAAATCTTGATGACCAGTTTTTCTGTCCTTTTCCACCAGTGCAGAAGAGATCTACATCATTATCGCTTACCTGTTCTACTGATAATGGAAACCAAGAAAAGAGGAATTTTGAGAAACAACCAACAAAAACTCGAATTGGAAATGCAATCCGGAACACCTGGGTAAGAAAGGATTCTGAACATAGGACCTGCAAGAAGGCTCCATTGGTGTTAAGCAGCTCAATGGTAATGATCAGTGAAGTGTTTAATTTGCTGCAGTCTGATATGCTAATAGAATATTCGCCTCTACTCTTTTGTTGTAGCTGTATCGATAGTATGATTGAATTTGTTGGTTTAATTAAGGTCAACGTGGTTAGAGGAACCAATTTAGCTATCAGGGATGTCGTGACGAGCGATCCGTATGTAATTCTATCATTGGGTCAACAATCAGTTAAGACACGTGTCATAAAGAGCAGTTTAAATCCAGTGTGGAATGAGAGCCTAATGTTGTCAATTCCAGAACACATTCCTCCACTAAAAGTGCTTGTGTACGACAAAGATACGTTTTCAACCGATGACTTCATGGGTGAAGCGGAAATTGATATCAATCCACTGCTCACCGCCGCCCGAGCATGTGAGAGGTCCGTAGTCAAAGAACCAATGCAGCTAGGCAAATGGGTTGCAAGCAAGGATAACACCCTTGCAAAGGATGGCATCATCAGCCTCGTAGATGGGAAGATTCGTCAAGACATCTCATTGAAGCTGGAGAACGTCGAGAGGGGTGTGCTCGAGATGGAACTTGAATGTGTTCCTCTTAGTCAGTAG 1158 42.23 SGTQKRLKDLTSQSANKFCADCGSPDPKWVSLSFGAFICIKCSGVHRSLGVHISKVLSVKLDDWTDEQVDALSSIGGNTAVNRKLEVCIPDGNKKPQPDSSIEERFDFIRKKYELLQFSNLDDQFFCPFPPVQKRSTSLSLTCSTDNGNQEKRNFEKQPTKTRIGNAIRNTWVRKDSEHRTCKKAPLVLSSSMVMISEVFNLLQSDMLIEYSPLLFCCSCIDSMIEFVGLIKVNVVRGTNLAIRDVVTSDPYVILSLGQQSVKTRVIKSSLNPVWNESLMLSIPEHIPPLKVLVYDKDTFSTDDFMGEAEIDINPLLTAARACERSVVKEPMQLGKWVASKDNTLAKDGIISLVDGKIRQDISLKLENVERGVLEMELECVPLSQ 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 19382350 19386758 - MC09g1328 Mch9g1741 698623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g1741 385 CDD ArfGap 7 113 - -
Mch9g1741 385 SMART arf_gap_3 4 125 IPR001164 GO:0005096(InterPro)
Mch9g1741 385 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 228 322 IPR035892 -
Mch9g1741 385 FunFam stromal membrane-associated protein 1 isoform X1 1 124 - -
Mch9g1741 385 Pfam C2 domain 230 317 IPR000008 -
Mch9g1741 385 Gene3D C2 domain 228 382 IPR035892 -
Mch9g1741 385 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 1 385 IPR044518 GO:0005096(InterPro)|GO:0005543(InterPro)
Mch9g1741 385 Gene3D Arf GTPase activating protein 1 125 IPR038508 -
Mch9g1741 385 ProSiteProfiles ARF GTPase-activating proteins domain profile. 4 118 IPR001164 GO:0005096(InterPro)
Mch9g1741 385 Pfam Putative GTPase activating protein for Arf 5 119 IPR001164 GO:0005096(InterPro)
Mch9g1741 385 PRINTS HIV Rev interacting protein signature 16 35 IPR001164 GO:0005096(InterPro)
Mch9g1741 385 PRINTS HIV Rev interacting protein signature 56 77 IPR001164 GO:0005096(InterPro)
Mch9g1741 385 PRINTS HIV Rev interacting protein signature 35 52 IPR001164 GO:0005096(InterPro)
Mch9g1741 385 SMART C2_3c 230 325 IPR000008 -
Mch9g1741 385 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 227 385 - -
Mch9g1741 385 ProSiteProfiles C2 domain profile. 210 327 IPR000008 -
Mch9g1741 385 SUPERFAMILY ArfGap/RecO-like zinc finger 4 118 IPR037278 -
Mch9g1741 385 CDD C2_ArfGAP 228 372 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g1592 Mch-Chr4:19168577 Mch9g1741 Mch-Chr9:19382350 5.76E-165 dispersed
Mch4g2159 Mch-Chr4:23459199 Mch9g1741 Mch-Chr9:19382350 3.01E-08 dispersed
Mch5g1066 Mch-Chr5:8659508 Mch9g1741 Mch-Chr9:19382350 3.30E-16 dispersed
Mch6g2181 Mch-Chr6:24153976 Mch9g1741 Mch-Chr9:19382350 1.91E-17 dispersed
Mch6g2691 Mch-Chr6:28589977 Mch9g1741 Mch-Chr9:19382350 2.73E-08 dispersed
Mch9g1288 Mch-Chr9:14944469 Mch9g1741 Mch-Chr9:19382350 4.19E-30 dispersed
Mch9g1741 Mch-Chr9:19382350 Mch1g2092 Mch-Chr1:20297906 7.55E-107 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g1741 K12486 - csv:101221541 616.305