Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g1742 ATGTCATCTGCAAATCCTTATTTTGATGACATTCGGAGCAAACCTGAGGTTATCGATCCTCCCCCAAACGACGACATGATGGATGTAAGTGAAAGTGTGAGTGATCCGTCTCGAAATGGAGGGAAACCTAATGTAGCTGTCTCTAGCAGTGTCCGTGACCTGTTGGAGTGCCCTGTTTGCTTAAATGCTATGTACCCTCCCATTCATCAGTGTTCTAACGGTCACACGTTGTGTTCTGGTTGCAAGCCAAGGGTGCACAACCGGTGTCCGACCTGCAGGCATGAACTCGGGAATATCAGATGTCTTGCATTAGAGAAGGTGGCTGCATCTCTGGAACTTCCATGTAAATATCAATCGTTCGGATGCGTGGGCATATACCCGTACTATAGCAAGCTGAAACACGAATCACAATGTGTGTATCGACCCTATAACTGTCCATATGCGGGGTCGGAATGCACAGTTGTTGGCGACATTCCTTTTCTGGTAACCCACCTCAAGGATGATCACAAAGTTGATATGCACAATGGGAGCACTTTCAATCATCGCTATGTCAAGTCCAATCCACAAGAGGTCGAAAACGCTACCTGGATGCTAACGGTCTTCAGCTGTTTTGGTCAGTACTTTTGCTTACATTTCGAAGCCTTCCAGCTCGGCATGGCGCCCGTGTACATAGCATTCTTGCGGTTTATGGGTGACGACAATGAGGCGAAGAACTACAGTTACAGTCTCGAGGTTGGAGGAAATGGGAGGAAGATGGTTTGGCAAGGAGTGCCACGGAGTATACGGGACGGTCACCGGAAGGTCCGAGACAGCTTCGACGGTCTTATCATCCAACGGAATATGGCGCTTTTCTTCTCCGGAGGCGATCGGAAGGAGTTGAAACTCAGGGTAACTGGTAGGATTTGGAAGGAGCAGTAG 918 48.58 MSSANPYFDDIRSKPEVIDPPPNDDMMDVSESVSDPSRNGGKPNVAVSSSVRDLLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQSFGCVGIYPYYSKLKHESQCVYRPYNCPYAGSECTVVGDIPFLVTHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMVWQGVPRSIRDGHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 19389569 19394139 - MC09g1329 Mch9g1742 698624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g1742 305 FunFam E3 ubiquitin-protein ligase SINAT3 109 165 - -
Mch9g1742 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 161 IPR013083 -
Mch9g1742 305 Pfam Sina, TRAF-like domain 201 298 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Mch9g1742 305 FunFam E3 ubiquitin-protein ligase SINAT5-like 166 298 - -
Mch9g1742 305 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 39 300 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Mch9g1742 305 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 162 298 IPR008974 GO:0005515(InterPro)
Mch9g1742 305 CDD RING-HC_SIAHs 55 93 - -
Mch9g1742 305 MobiDBLite consensus disorder prediction 30 46 - -
Mch9g1742 305 ProSiteProfiles Zinc finger SIAH-type profile. 110 170 IPR013010 GO:0008270(InterPro)
Mch9g1742 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 109 IPR013083 -
Mch9g1742 305 MobiDBLite consensus disorder prediction 1 46 - -
Mch9g1742 305 SUPERFAMILY TRAF domain-like 110 302 - -
Mch9g1742 305 ProSiteProfiles Zinc finger RING-type profile. 57 93 IPR001841 -
Mch9g1742 305 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 57 92 IPR049548 -
Mch9g1742 305 FunFam E3 ubiquitin-protein ligase SINAT5-like 15 108 - -
Mch9g1742 305 Pfam Sina, zinc finger 106 181 - -
Mch9g1742 305 CDD Sina 171 299 - -
Mch9g1742 305 SUPERFAMILY RING/U-box 49 97 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0060 Mch-Chr10:323386 Mch9g1742 Mch-Chr9:19389569 5.18E-172 dispersed
Mch10g0061 Mch-Chr10:326444 Mch9g1742 Mch-Chr9:19389569 2.19E-171 dispersed
Mch1g0314 Mch-Chr1:6730435 Mch9g1742 Mch-Chr9:19389569 7.86E-170 dispersed
Mch4g1590 Mch-Chr4:19156332 Mch9g1742 Mch-Chr9:19389569 8.02E-220 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g1742 K04506 - csv:101205198 621.313