Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g1765 ATGGGGAAGAAAGGGTGGTTTTCTACAGCGAGGAGGGTTCTCAGTCTCAGTTCTGAGAAGAAAGATAAGAAACAAGACAAATCCAAGAAAAAATGGTTTCAAGAGGAAGAGCAAGAGAGTACGGATGTGATATCCTTTTTGGAACAATCCCCATCGGATGTTCCTGTACAACCTCCTCTTATAGAAGATGATGTCAAACAAACCCAACCAAAGAATGAACGAAGCGTGTTCGAACGCTCCGAGGATGTGGAGCCTGCTGTCAGTGCAGCTCAGCCGGATGGGGAGGTTGAACGTTCACCTAGTATTATCTCCTGTCACCCAGAAATGTCGGAGGAAGATGCAGCTATTATGATTCAAACTGCTTTTCGTGGATATACGGCAAGGAGAGCATTGAGGGCTCTGAAAGCGTTGATGAGACTGAAGTCATTGGTACAAGGGCAGTCTGTCAAACGGCAAGTGGCTTCTTCTTTAAAATCCATGCAGACCCTTTCCCATGTACAGTCAGAGATTCGTGCTAGGAGAATTAGAATGTCAGAAGAAAATCAGGCTCTTCAGCGGCAACTTCGTCTTAGACGCGAAAAAGAGCTTGAGAAGTTAAAACCTACAGCTATGGACGAGGACTGGAACCATAGCACCCAATCTAAAGCACAAGTTGAAGCTAAACTATTGAACAAGCAAGAAGCTGCACTAAGAAGAGAAAGGGCTCTGGCTTATTCTTACTCTCATCAGCAAACATGGAAAAATTCTTCTAAAACTGCAACCGACCCAAACAATCCCCACTGGGGTTGGAGTTGGTTGGAGAGGTGGATGGCAGCTCGTCCGTGGGAAACTCGAAGCATCACTGATCACCAAGATAACGTCTCTGTCACGAGTATGGCAACTCGTGCATCTGTGGTCGACATAATCGAAGTTTATGGTCGTCGTGATCAGAACCTTGCAGCCCAGTCTTCCCCAAGGACTCCTACTAGCCATAAGTCAAGCCAACTGCTTAGGCAACGGCCACCTTCAACTCTGAAGGCATCATCTTCATCTGGCAGACAGAAAACAAATTCGGCCAACCTGGGATTAGGTAGCTGGGGCGGTGATGATGACTTGAGAAGCATAGCGAGTGACAAGGCAAAGCTCTCCCGGAGGCATACTATTGCAGGGTCATCGTTCAGGGACGACAAGATCCTTGTCAGTTTACCTTCAGTTACAAGTTACACGAATATATCGAAGGCTGTGAAGACTCGGTCCCGGTTGGCAAGTTCATCTGGAGCAGAGAAGAAAGGCAGTACATTTGAAAAAGGGTCTGCAAGTGCAAATTCTGTAAAGAAGCGGCTCTCATTTACCACTTCCCCCGCTAAACCAAGAAGGCTATCAAGTCCTCCAATTGTGAATGCTTAG 1386 46.68 MGKKGWFSTARRVLSLSSEKKDKKQDKSKKKWFQEEEQESTDVISFLEQSPSDVPVQPPLIEDDVKQTQPKNERSVFERSEDVEPAVSAAQPDGEVERSPSIISCHPEMSEEDAAIMIQTAFRGYTARRALRALKALMRLKSLVQGQSVKRQVASSLKSMQTLSHVQSEIRARRIRMSEENQALQRQLRLRREKELEKLKPTAMDEDWNHSTQSKAQVEAKLLNKQEAALRRERALAYSYSHQQTWKNSSKTATDPNNPHWGWSWLERWMAARPWETRSITDHQDNVSVTSMATRASVVDIIEVYGRRDQNLAAQSSPRTPTSHKSSQLLRQRPPSTLKASSSSGRQKTNSANLGLGSWGGDDDLRSIASDKAKLSRRHTIAGSSFRDDKILVSLPSVTSYTNISKAVKTRSRLASSSGAEKKGSTFEKGSASANSVKKRLSFTTSPAKPRRLSSPPIVNA 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 19578536 19583210 - MC09g1350 Mch9g1765 698647

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g1765 461 MobiDBLite consensus disorder prediction 1 100 - -
Mch9g1765 461 SMART iq_5 110 132 IPR000048 GO:0005515(InterPro)
Mch9g1765 461 MobiDBLite consensus disorder prediction 411 461 - -
Mch9g1765 461 MobiDBLite consensus disorder prediction 310 356 - -
Mch9g1765 461 MobiDBLite consensus disorder prediction 15 38 - -
Mch9g1765 461 MobiDBLite consensus disorder prediction 66 81 - -
Mch9g1765 461 MobiDBLite consensus disorder prediction 411 451 - -
Mch9g1765 461 ProSiteProfiles IQ motif profile. 111 139 - -
Mch9g1765 461 PANTHER IQ-DOMAIN 5-RELATED 3 429 - -
Mch9g1765 461 MobiDBLite consensus disorder prediction 310 357 - -
Mch9g1765 461 Pfam IQ calmodulin-binding motif 113 132 IPR000048 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g1765 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g0291 Mch-Chr4:1872019 Mch9g1765 Mch-Chr9:19578536 3.42E-13 dispersed
Mch7g0083 Mch-Chr7:896691 Mch9g1765 Mch-Chr9:19578536 1.46E-18 dispersed
Mch9g0244 Mch-Chr9:1837269 Mch9g1765 Mch-Chr9:19578536 2.08E-12 dispersed
Mch1g0786 Mch-Chr1:11528501 Mch9g1765 Mch-Chr9:19578536 2.33E-68 wgd
Mch4g2077 Mch-Chr4:22941834 Mch9g1765 Mch-Chr9:19578536 3.73E-109 wgd
Mch5g1773 Mch-Chr5:18235496 Mch9g1765 Mch-Chr9:19578536 2.34E-43 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch9g1765 . 111 276 IQD Protein Family AT3G09710 54.1 6.8e-42 168.7
Mch4g2077 . 1 475 IQD Protein Family AT3G52290 54.6 4.4e-104 375.2
Mch6g1311 . 3 411 IQD Protein Family AT3G22190 56.9 8.2e-95 344.4
Mch11g0421 . 72 508 IQD Protein Family AT2G26180 59.5 3.7e-116 415.2
Mch10g1067 . 40 215 IQD Protein Family AT2G33990 55.3 7.2e-49 191.0
Mch10g1067 . 17 216 IQD Protein Family AT3G15050 56.2 1.2e-56 216.9
Mch4g1577 . 128 475 IQD Protein Family AT5G13460 50.7 5.4e-73 271.9
Mch7g0083 . 106 486 IQD Protein Family AT2G43680 53.4 1.2e-87 321.2
Mch5g0018 . 1 508 IQD Protein Family AT4G00820 55.1 2.0e-122 436.4
Mch5g0018 . 1 508 IQD Protein Family AT1G01110 53.4 1.4e-120 430.3
Mch9g0298 . 1 397 IQD Protein Family AT3G16490 52.8 3.3e-74 275.8
Mch6g0862 . 1 394 IQD Protein Family AT3G16490 51.2 7.1e-69 258.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012991 0 3 0 0 0 1 2 0 0 1 1 0 2 1 1 2 0 0 2 0 1 1 1 1 1 1 1 2 3 0 28