Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g1784 ATGGCGAAAGACGACGTGTCGGCTGGGCGAGGGTCGTACTCCGGCAAGGACTACCACGACCCGCCGCCGGCTCCGCTGTTCGACGGAGCGGAGCTGGGCAAGTGGTCCTTTTACAGGGCCATCATTGCCGAGTTCATCGCCACTCTCCTTTTTCTCTACATCACCGTCTTGACCGTCATTGGCTACAGAAGCCAGACCGACCCAGACAAGCCCGGCGCCGACGCTTGCGGCGGCGTTGGGATCCTCGGCATCGCTTGGGCCTTCGGCGGCATGATCTTCGTTCTCGTCTACTGCACCGCCGGCATTTCAGGTGGGCATATAAACCCGGCGGTGACGTTCGGGCTGTTGTTGGCTCGGAAGGTGTCGCTGGTCCGGGCGGTGGCGTACATGGTGGCTCAGTGCTTGGGAGCCATAAGCGGCGTGGGGCTCGTGAAAGCCTTTCAGACGGCTTACTTCCACAAGTACGGCGGCGGCGCGAACCAGCTCGCCGACGGCTACAGCAAAGGCGTCGGCTTGGCGGCGGAGATCGTCGGCACCTTCGTCTTGGTCTACACCGTCTTCTCCGCCACCGATCCCAAGAGAAATGCCAGAGACTCCCATGTTCCTGTACTGGCTCCGCTCCCGATCGGGTTTGCGGTGTTCATGGTTCACCTAGCCACCATCCCCATCACTGGCACGGGCATCAACCCTGCCAGAAGCCTCGGCGCTGCTGTTATCTTGAACAAGGAAAAGCCCTGGAACGACCACTGGATATTCTGGGTTGGGCCTCTCGTCGGAGCCGCCATCGCAGCCTTCTACCACCAGTTCATTCTGAGGGCTGGCGCGGCCAAGGCTCTCGGCTCTTTCAGGAGTAGCCACTCCGTTTAA 867 61.25 MAKDDVSAGRGSYSGKDYHDPPPAPLFDGAELGKWSFYRAIIAEFIATLLFLYITVLTVIGYRSQTDPDKPGADACGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLLLARKVSLVRAVAYMVAQCLGAISGVGLVKAFQTAYFHKYGGGANQLADGYSKGVGLAAEIVGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVILNKEKPWNDHWIFWVGPLVGAAIAAFYHQFILRAGAAKALGSFRSSHSV 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 19720111 19725041 - MC09g_new0417 Mch9g1784 698666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g1784 288 ProSitePatterns MIP family signature. 106 114 IPR022357 -
Mch9g1784 288 Gene3D Glycerol uptake facilitator protein. 24 288 IPR023271 -
Mch9g1784 288 FunFam Probable aquaporin PIP1-2 24 286 - -
Mch9g1784 288 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch9g1784 288 PRINTS Major intrinsic protein family signature 174 192 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch9g1784 288 PRINTS Major intrinsic protein family signature 210 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch9g1784 288 PRINTS Major intrinsic protein family signature 88 112 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch9g1784 288 PRINTS Major intrinsic protein family signature 125 144 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch9g1784 288 PRINTS Major intrinsic protein family signature 250 270 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch9g1784 288 Pfam Major intrinsic protein 32 267 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch9g1784 288 NCBIfam MIP family channel protein 43 267 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch9g1784 288 SUPERFAMILY Aquaporin-like 33 272 IPR023271 -
Mch9g1784 288 CDD MIP 39 270 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch9g1784 288 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 4 284 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0800 Mch-Chr1:11615301 Mch9g1784 Mch-Chr9:19720111 1.03E-169 dispersed
Mch1g0802 Mch-Chr1:11632059 Mch9g1784 Mch-Chr9:19720111 9.03E-158 dispersed
Mch2g0984 Mch-Chr2:6647741 Mch9g1784 Mch-Chr9:19720111 1.02E-143 dispersed
Mch8g0338 Mch-Chr8:2375034 Mch9g1784 Mch-Chr9:19720111 1.41E-30 dispersed
Mch9g1488 Mch-Chr9:17282187 Mch9g1784 Mch-Chr9:19720111 1.04E-134 dispersed
Mch9g1489 Mch-Chr9:17287242 Mch9g1784 Mch-Chr9:19720111 3.69E-137 dispersed
Mch1g0798 Mch-Chr1:11604393 Mch9g1784 Mch-Chr9:19720111 4.83E-149 wgd
Mch2g0356 Mch-Chr2:2667614 Mch9g1784 Mch-Chr9:19720111 6.44E-160 wgd
Mch4g2057 Mch-Chr4:22803334 Mch9g1784 Mch-Chr9:19720111 1.69E-178 wgd
Mch5g1752 Mch-Chr5:18123479 Mch9g1784 Mch-Chr9:19720111 3.12E-147 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g1784 K09872 - csv:101204956 518.85